Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0888 ATGGCAGAGCATGTTCAAGTGTTTGGTTTCTGGGAAAGTGCGTTCAGTCGGCGAGTGGAGTTGGCTCTCAAACTCAAAGGCGTCGAATACCAATACTTTGAGGAAGATTTACCCCACAACAAGAGCCATTTGCTGCTGAAATACAATCCAATTTACAAGAAAGTGCCTGTTCTACTCCACCATGGAAAACCCATTGCAGAGTCTCTTGTAATCCTTGAATACATTGATGAAATCTGGAAAACCAATCCCATTTTACCCCAACATCCCCATCAAAGAGCTCTTGCCAGGTTCTGGGCTAAGTTTATCGATGACAAGGTTGTGTGTGCAGTAGTGAAGGCTGCTGGAAGCAAAGAAGAAGAGAGAAAGAAAGCTATAGAGGAAGCAAGGGAGGCATTGGAAGCACTTGAGAAAGAGCTTAAAAGCAACAACTTCTTTGGAGGAGAAGAAATTGGGTTTGTGGACATTGTTGGGACTGTGATAGCTGGTTGGGTTCCTGCCATTGAAGAATGCTTTGGGTTTGAGCTGCTCACAACTAATAACTTCCCTAACCTAATCAAATGGAGTGAACAGCTTCTTAACCATGCTGTTGTAAACCAGATTCTGCCTCCAAAAAATGAGATCGTTTCCTTTATGCAAGCTAATTGGAAAGTTTGA 654 42.97 MAEHVQVFGFWESAFSRRVELALKLKGVEYQYFEEDLPHNKSHLLLKYNPIYKKVPVLLHHGKPIAESLVILEYIDEIWKTNPILPQHPHQRALARFWAKFIDDKVVCAVVKAAGSKEEERKKAIEEAREALEALEKELKSNNFFGGEEIGFVDIVGTVIAGWVPAIEECFGFELLTTNNFPNLIKWSEQLLNHAVVNQILPPKNEIVSFMQANWKV 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28595535 28596739 + CePI673135_04g008880.1 Cec04g0888 200370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0888 217 FunFam Tau class glutathione S-transferase 1 87 - -
Cec04g0888 217 SUPERFAMILY GST C-terminal domain-like 77 215 IPR036282 -
Cec04g0888 217 CDD GST_N_Tau 5 79 - -
Cec04g0888 217 FunFam Tau class glutathione S-transferase 85 217 - -
Cec04g0888 217 SFLD Main.3: Omega- and Tau-like 2 213 IPR045073 -
Cec04g0888 217 Pfam Glutathione S-transferase, C-terminal domain 98 193 IPR004046 -
Cec04g0888 217 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Cec04g0888 217 SFLD Main (cytGST) 2 213 - -
Cec04g0888 217 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 212 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cec04g0888 217 CDD GST_C_Tau 89 213 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cec04g0888 217 Coils Coil 114 142 - -
Cec04g0888 217 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Cec04g0888 217 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 217 IPR010987 -
Cec04g0888 217 Gene3D Glutaredoxin 1 84 - -
Cec04g0888 217 Gene3D - 85 217 - -
Cec04g0888 217 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1775 Cec-Chr1:32265841 Cec04g0888 Cec-Chr4:28595535 5.40E-46 dispersed
Cec01g1776 Cec-Chr1:32271500 Cec04g0888 Cec-Chr4:28595535 7.20E-46 dispersed
Cec04g0888 Cec-Chr4:28595535 Cec04g0897 Cec-Chr4:28667559 2.60E-79 dispersed
Cec04g0887 Cec-Chr4:28592700 Cec04g0888 Cec-Chr4:28595535 4.90E-73 tandem
Cec04g0888 Cec-Chr4:28595535 Cec04g0889 Cec-Chr4:28598658 5.70E-66 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0888 K00799 - csv:105435246 352.058