Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0888 ATGGCAGAGCATGTTCAAGTGTTTGGTTTCTGGGAAAGTGCGTTCAGTCGGCGAGTGGAGTTGGCTCTCAAACTCAAAGGCGTCGAATACCAATACTTTGAGGAAGATTTACCCCACAACAAGAGCCATTTGCTGCTGAAATACAATCCAATTTACAAGAAAGTGCCTGTTCTACTCCACCATGGAAAACCCATTGCAGAGTCTCTTGTAATCCTTGAATACATTGATGAAATCTGGAAAACCAATCCCATTTTACCCCAACATCCCCATCAAAGAGCTCTTGCCAGGTTCTGGGCTAAGTTTATCGATGACAAGGTTGTGTGTGCAGTAGTGAAGGCTGCTGGAAGCAAAGAAGAAGAGAGAAAGAAAGCTATAGAGGAAGCAAGGGAGGCATTGGAAGCACTTGAGAAAGAGCTTAAAAGCAACAACTTCTTTGGAGGAGAAGAAATTGGGTTTGTGGACATTGTTGGGACTGTGATAGCTGGTTGGGTTCCTGCCATTGAAGAATGCTTTGGGTTTGAGCTGCTCACAACTAATAACTTCCCTAACCTAATCAAATGGAGTGAACAGCTTCTTAACCATGCTGTTGTAAACCAGATTCTGCCTCCAAAAAATGAGATCGTTTCCTTTATGCAAGCTAATTGGAAAGTTTGA 654 42.97 MAEHVQVFGFWESAFSRRVELALKLKGVEYQYFEEDLPHNKSHLLLKYNPIYKKVPVLLHHGKPIAESLVILEYIDEIWKTNPILPQHPHQRALARFWAKFIDDKVVCAVVKAAGSKEEERKKAIEEAREALEALEKELKSNNFFGGEEIGFVDIVGTVIAGWVPAIEECFGFELLTTNNFPNLIKWSEQLLNHAVVNQILPPKNEIVSFMQANWKV 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28595535 28596739 + CePI673135_04g008880.1 Cec04g0888 200370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0888 217 FunFam Tau class glutathione S-transferase 1 87 - -
Cec04g0888 217 SUPERFAMILY GST C-terminal domain-like 77 215 IPR036282 -
Cec04g0888 217 CDD GST_N_Tau 5 79 - -
Cec04g0888 217 FunFam Tau class glutathione S-transferase 85 217 - -
Cec04g0888 217 SFLD Main.3: Omega- and Tau-like 2 213 IPR045073 -
Cec04g0888 217 Pfam Glutathione S-transferase, C-terminal domain 98 193 IPR004046 -
Cec04g0888 217 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Cec04g0888 217 SFLD Main (cytGST) 2 213 - -
Cec04g0888 217 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 212 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cec04g0888 217 CDD GST_C_Tau 89 213 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cec04g0888 217 Coils Coil 114 142 - -
Cec04g0888 217 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Cec04g0888 217 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 217 IPR010987 -
Cec04g0888 217 Gene3D Glutaredoxin 1 84 - -
Cec04g0888 217 Gene3D - 85 217 - -
Cec04g0888 217 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0888 K00799 - - csv:105435246 352.058
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1775 Cec-Chr1:32265841 Cec04g0888 Cec-Chr4:28595535 5.40E-46 dispersed
Cec01g1776 Cec-Chr1:32271500 Cec04g0888 Cec-Chr4:28595535 7.20E-46 dispersed
Cec04g0888 Cec-Chr4:28595535 Cec04g0897 Cec-Chr4:28667559 2.60E-79 dispersed
Cec04g0887 Cec-Chr4:28592700 Cec04g0888 Cec-Chr4:28595535 4.90E-73 tandem
Cec04g0888 Cec-Chr4:28595535 Cec04g0889 Cec-Chr4:28598658 5.70E-66 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec09g0586 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 1.4e-64 243.0
Cec09g0584 . 1 210 Glutathione S-transferase Gene Family AT4G02520 59.6 2.4e-64 242.3
Cec09g0585 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 2.5e-58 222.2
Cec09g0584 . 1 211 Glutathione S-transferase Gene Family AT2G02930 60.7 1.2e-65 246.5
Cec09g0586 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.7 4.0e-64 241.5
Cec09g0585 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 2.3e-59 225.7
Cec09g0586 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.2 2.5e-60 229.2
Cec09g0584 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 9.4e-60 227.3
Cec09g0585 . 5 206 Glutathione S-transferase Gene Family AT1G02950 51.7 7.2e-52 201.1
Cec09g0584 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 6.7e-64 240.7
Cec09g0586 . 1 210 Glutathione S-transferase Gene Family AT1G02930 54.8 4.1e-61 231.5
Cec09g0585 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 2.3e-56 215.7
Cec09g0584 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.7e-65 245.4
Cec09g0586 . 1 210 Glutathione S-transferase Gene Family AT1G02920 55.2 3.7e-62 235.0
Cec09g0585 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 2.5e-58 222.2
Cec09g0586 . 1 215 Glutathione S-transferase Gene Family AT2G47730 57.9 5.7e-68 254.6
Cec09g0584 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.2 2.0e-65 246.1
Cec09g0585 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.8 3.9e-61 231.9
Cec09g0587 . 1 214 Glutathione S-transferase Gene Family AT3G62760 57.9 9.8e-74 273.5
Cec09g0584 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 1.7e-48 189.9
Cec04g0897 . 3 214 Glutathione S-transferase Gene Family AT3G09270 53.8 3.2e-64 241.9
Cec04g0888 . 3 213 Glutathione S-transferase Gene Family AT3G09270 52.8 4.7e-63 238.0
Cec04g0899 . 3 212 Glutathione S-transferase Gene Family AT3G09270 52.8 8.0e-55 210.7
Cec05g2664 . 1 130 Glutathione S-transferase Gene Family AT1G74590 53.8 9.2e-38 154.1
Cec07g1154 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.5 1.8e-88 322.4
Cec07g1156 . 1 216 Glutathione S-transferase Gene Family AT1G78380 69.4 1.0e-86 316.6
Cec07g1155 . 1 217 Glutathione S-transferase Gene Family AT1G78380 66.8 2.9e-81 298.5
Cec01g0865 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.4 8.1e-68 253.8
Cec07g1154 . 7 214 Glutathione S-transferase Gene Family AT1G78370 65.4 5.3e-80 294.3
Cec07g1156 . 7 214 Glutathione S-transferase Gene Family AT1G78370 62.5 6.8e-75 277.3
Cec07g1155 . 7 216 Glutathione S-transferase Gene Family AT1G78370 57.6 7.7e-71 263.8
Cec01g0865 . 7 220 Glutathione S-transferase Gene Family AT1G78370 54.7 5.4e-64 241.1
Cec07g1154 . 1 214 Glutathione S-transferase Gene Family AT1G78340 65.0 8.3e-81 297.0
Cec07g1156 . 1 216 Glutathione S-transferase Gene Family AT1G78340 63.4 7.7e-79 290.4
Cec07g1155 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.4 9.8e-74 273.5
Cec01g0865 . 4 218 Glutathione S-transferase Gene Family AT1G78340 54.0 3.5e-63 238.4
Cec07g1154 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.7 3.8e-61 231.5
Cec07g1154 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.6 2.4e-91 332.0
Cec07g1156 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.0 2.0e-82 302.4
Cec07g1155 . 1 220 Glutathione S-transferase Gene Family AT1G17180 61.8 3.8e-81 298.1
Cec01g0865 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.7 1.6e-68 256.1
Cec07g1154 . 3 217 Glutathione S-transferase Gene Family AT1G17190 59.1 2.4e-75 278.9
Cec07g1156 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.0 9.3e-72 266.9
Cec07g1155 . 2 218 Glutathione S-transferase Gene Family AT1G17190 54.4 1.9e-69 259.2
Cec07g1154 . 3 214 Glutathione S-transferase Gene Family AT3G43800 59.3 5.1e-73 271.2
Cec07g1156 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.5 2.6e-69 258.8
Cec07g1155 . 3 212 Glutathione S-transferase Gene Family AT3G43800 52.6 1.7e-65 246.1
Cec07g1154 . 4 218 Glutathione S-transferase Gene Family AT1G53680 58.5 8.0e-71 263.8
Cec07g1156 . 2 219 Glutathione S-transferase Gene Family AT1G53680 56.4 8.3e-68 253.8
Cec01g0865 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 9.4e-64 240.4
Cec02g0038 . 55 221 Glutathione S-transferase Gene Family AT2G02390 68.3 9.9e-62 233.4
Cec05g0261 . 61 217 Glutathione S-transferase Gene Family AT2G02390 51.6 7.1e-44 174.1
Cec02g0038 . 14 224 Glutathione S-transferase Gene Family AT2G02380 64.9 2.8e-76 282.0
Cec05g0261 . 18 217 Glutathione S-transferase Gene Family AT2G02380 54.0 3.8e-57 218.4
Cec07g0880 . 88 327 Glutathione S-transferase Gene Family AT5G41210 67.5 1.1e-92 336.7
Cec07g0880 . 88 332 Glutathione S-transferase Gene Family AT5G41240 64.7 2.0e-89 327.0
Cec10g2074 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.5e-83 305.4
Cec10g2075 . 15 228 Glutathione S-transferase Gene Family AT5G02780 66.7 4.8e-82 301.2
Cec02g1447 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.4e-80 295.0
Cec10g2073 . 5 232 Glutathione S-transferase Gene Family AT5G02780 62.8 1.9e-75 279.3
Cec02g1447 . 34 292 Glutathione S-transferase Gene Family AT3G55040 61.5 1.1e-85 313.5
Cec10g2074 . 3 230 Glutathione S-transferase Gene Family AT3G55040 59.0 2.6e-77 285.8
Cec10g2075 . 6 226 Glutathione S-transferase Gene Family AT3G55040 60.1 7.4e-77 284.3
Cec10g2073 . 6 230 Glutathione S-transferase Gene Family AT3G55040 55.5 1.8e-70 263.1
Cec10g2074 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 1.8e-89 325.9
Cec10g2075 . 15 228 Glutathione S-transferase Gene Family AT5G02790 69.2 3.7e-87 318.2
Cec10g2073 . 5 232 Glutathione S-transferase Gene Family AT5G02790 65.2 3.3e-83 305.1
Cec02g1447 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.6e-82 301.6
Cec02g1423 . 1 212 Glutathione S-transferase Gene Family AT1G19570 66.2 4.7e-81 297.7
Cec05g1315 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.9 5.3e-72 267.7
Cec11g0974 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.4 1.5e-71 266.2
Cec02g1423 . 1 211 Glutathione S-transferase Gene Family AT1G75270 70.3 1.7e-86 315.8
Cec05g1315 . 65 272 Glutathione S-transferase Gene Family AT1G75270 61.7 8.7e-75 276.9
Cec11g0974 . 65 272 Glutathione S-transferase Gene Family AT1G75270 61.7 4.3e-74 274.6
Cec05g1315 . 54 272 Glutathione S-transferase Gene Family AT5G16710 77.2 1.3e-101 366.3
Cec11g0974 . 9 272 Glutathione S-transferase Gene Family AT5G16710 67.7 1.1e-100 363.2
Cec02g1423 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.6 1.7e-72 269.6
Cec11g1651 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.0 3.6e-110 394.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000231 3 5 1 2 2 8 4 7 6 9 3 5 6 8 8 6 6 1 5 7 8 4 5 5 7 9 4 6 8 4 162