Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0909 ATGGCGGAGGGTTTTGAAGTTTACCATGTCCCACAACAAAGCAGGAGAGACAAGCTTAGAGTTGGAATTGGAATTGGTACTACTAATTCTACTAATTCTATTAATCATCATAATAATTTCTTCCCTTTATATGATGATCCTTCTTCTTTTATTTCTTCCGATTTTGATTTTCATCAAAATCCCTCTTTTCAACTTTATCATCATCATAATTACCCTCCTACCTCTGCTGTCACCGCCGCCGCCCTCCACCACCACCTCCCTCCACTCCTCTCCGACCAACAACCACCCTTGTCCCTTGACCTCAACCTCCAACACCGCTACGCCTATCATTCTACTTTACCACTTCAAGCCTCAAAATTCTTCAAGCCAGCTCAGCAGCTCCTCCATGACCTATTTGATTACGCCCCCCCTAACTCCTCCGACAAGTTGCTGCCGGATTCCGCCCTTCTTGACACCTTGGAAGGTGATATTCCCGCCGCCGCCGATGATGGACTTGAAACCCACACGACAAAATCTAGGCTTATTACCATGCTCCACGAGGTTTATAGAAGATATAAACTATACTATCAGCAAATGCAAGCAGTGGTTACAACATTTGAGTGCGCTGCAGGGCTTGGCAATGCAGCTCCCTATGCAAACTTAGCCGTAAAAGCCATGTTTAAGCACTTCAAATTCTTAAAGAACGCCATAGCGGACCAGCTCCAATTCAACAAGCAGCACCAACCGCCGTCTTACAATTCATATTCTCAAAGATCCATTAACAACCACGGTGCGGGATTCGGCGACCACCAACCCGTTTGGCGCCCGCAGCGAGGCCTCCCTGAGAGTGCTGTCACCGTCCTCCGAGCTTGGCTCTTTGAGCACTTCCTCCATCCTTATCCTACGGATACAGATAAGCTCATGTTGGCCAACCAGACGGGACTCTCAAGAAGTCAGGTATCAAACTGGTTCATCAATGCAAGAGTGAGACTATGGAAACCGATGGTTGAAGAAATCCACATGTTAGAAACAAGGGAAGCTCAAAAATCTCAGCAAAAGGAAGCCAACAATAATAATGCCTTAAACAACAACAACAACGACCATCTTTCATCCACAAACGAATGCTTAATGAAACCGGACGGCCACAACAACAACAATGCATCTTCTTCAAACCACGACCACCACCCTCTAGATTTGTCCAACACCCATTTCATTCCAACCCACCACCCTCACGCCGCTGCCGGAGCCACCGCTATTGGCGGCAGTGGCAACGTTTCCTTGACGCTCGGCCTCCACCAAAACCATGGTGGGATCACTCTCACGGAGCCATTTCCCATCAATGCTGCTCAGCCTTTTAACCTTGGGTTAGAAGCCAACGGTGAAGGATTTGTAAATGAGTGGTTTTGA 1386 47.33 MAEGFEVYHVPQQSRRDKLRVGIGIGTTNSTNSINHHNNFFPLYDDPSSFISSDFDFHQNPSFQLYHHHNYPPTSAVTAAALHHHLPPLLSDQQPPLSLDLNLQHRYAYHSTLPLQASKFFKPAQQLLHDLFDYAPPNSSDKLLPDSALLDTLEGDIPAAADDGLETHTTKSRLITMLHEVYRRYKLYYQQMQAVVTTFECAAGLGNAAPYANLAVKAMFKHFKFLKNAIADQLQFNKQHQPPSYNSYSQRSINNHGAGFGDHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETREAQKSQQKEANNNNALNNNNNDHLSSTNECLMKPDGHNNNNASSSNHDHHPLDLSNTHFIPTHHPHAAAGATAIGGSGNVSLTLGLHQNHGGITLTEPFPINAAQPFNLGLEANGEGFVNEWF 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28829256 28833679 + CePI673135_04g009090.1 Cec04g0909 200391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0909 461 FunFam BEL1-like homeodomain protein 9 270 332 - -
Cec04g0909 461 MobiDBLite consensus disorder prediction 344 388 - -
Cec04g0909 461 SMART prehox3 107 232 IPR006563 -
Cec04g0909 461 Gene3D - 270 332 - -
Cec04g0909 461 ProSiteProfiles 'Homeobox' domain profile. 264 327 IPR001356 GO:0003677(InterPro)
Cec04g0909 461 MobiDBLite consensus disorder prediction 339 401 - -
Cec04g0909 461 CDD homeodomain 267 328 IPR001356 GO:0003677(InterPro)
Cec04g0909 461 SUPERFAMILY Homeodomain-like 269 333 IPR009057 -
Cec04g0909 461 Pfam Associated with HOX 115 231 IPR006563 -
Cec04g0909 461 Pfam Homeobox KN domain 284 323 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec04g0909 461 SMART HOX_1 267 331 IPR001356 GO:0003677(InterPro)
Cec04g0909 461 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 361 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0909 Cec-Chr4:28829256 Cec04g1314 Cec-Chr4:32760880 2.20E-51 dispersed
Cec10g2156 Cec-Chr10:36069655 Cec04g0909 Cec-Chr4:28829256 2.70E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29312 PF07526 POX 9.10E-29 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0909 - - - 0.0