Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0951 ATGGCTTCTCTCTCTCTCCTCTGCTCCATTGCCTTCGCTTCTTTCTCCTCTCTCTTCCTCCTCTCTCACGCCAGAATCCCCGGTGTCTACTCCGGCGGCCCCTGGCAGGACGCTCATGCCACCTTCTATGGCGGCAGTGATGCCTCCGGAACCATGGGTGGTGCTTGTGGGTATGGGAATCTCTACAGCCAGGGCTATGGCGTCAACACAGCCGCCCTCAGTACTGCTCTCTTCAACAATGGCTTAAGCTGTGGTGCTTGCTTCGAGATCAAGTGTGCTAATGACCCTAGATGGTGCCATCCTGGTAGCCCATCCATTTTCATTACAGCTACCAATTTTTGTCCCCCGAATTTCGCACTGCCAAATGACAATGGCGGTTGGTGTAACCCTCCTCGTACTCATTTCGATCTCGCTATGCCTATGTTCCTCAAGATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCACTTACCGCCGGGTGCCATGTAGGAAACAAGGGGGAATCAGATTCACAATCAACGGTTTCCGTTACTTCAACTTGGTATTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGGTTAGCGTCAAAGGATCAAACACCGATTGGATAAGCATGAGCCGTAACTGGGGGCAAAATTGGCAATCCAACTCTGTTTTAGTGGGCCAGGCCCTTTCCTTCCGCGTCACCGGCAGTGACCGTCGTACCTCAACCTCATGGAACGTGGCACCATCTAATTGGCAGTTCGGACAGACCTTCACGGGAAAGAATTTCCGTGTTTGA 786 53.18 MASLSLLCSIAFASFSSLFLLSHARIPGVYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVTYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKVSVKGSNTDWISMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29183375 29184865 + CePI673135_04g009510.1 Cec04g0951 200433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0951 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576(InterPro)
Cec04g0951 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576(InterPro)
Cec04g0951 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576(InterPro)
Cec04g0951 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576(InterPro)
Cec04g0951 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576(InterPro)
Cec04g0951 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576(InterPro)
Cec04g0951 261 PANTHER EXPANSIN-A15 17 259 IPR002963 GO:0009664(InterPro)
Cec04g0951 261 FunFam Expansin 167 259 - -
Cec04g0951 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Cec04g0951 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
Cec04g0951 261 Pfam Lytic transglycolase 70 157 IPR009009 -
Cec04g0951 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664(InterPro)
Cec04g0951 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664(InterPro)
Cec04g0951 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664(InterPro)
Cec04g0951 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664(InterPro)
Cec04g0951 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664(InterPro)
Cec04g0951 261 PRINTS Expansin signature 92 103 IPR002963 GO:0009664(InterPro)
Cec04g0951 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664(InterPro)
Cec04g0951 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664(InterPro)
Cec04g0951 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664(InterPro)
Cec04g0951 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Cec04g0951 261 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Cec04g0951 261 Gene3D - 167 259 IPR036749 -
Cec04g0951 261 FunFam Expansin 24 163 - -
Cec04g0951 261 CDD DPBB_EXPA_N 34 162 - -
Cec04g0951 261 Gene3D - 23 163 IPR036908 -
Cec04g0951 261 SMART dpbb_1 70 157 IPR007112 -
Cec04g0951 261 SUPERFAMILY Barwin-like endoglucanases 34 185 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0951 Cec-Chr4:29183375 Cec07g0569 Cec-Chr7:7096549 3.00E-106 dispersed
Cec07g0818 Cec-Chr7:19128708 Cec04g0951 Cec-Chr4:29183375 9.30E-79 transposed
Cec02g2116 Cec-Chr2:38725318 Cec04g0951 Cec-Chr4:29183375 1.90E-137 wgd
Cec03g0141 Cec-Chr3:1400137 Cec04g0951 Cec-Chr4:29183375 1.50E-134 wgd
Cec04g0951 Cec-Chr4:29183375 Cec07g0374 Cec-Chr7:3761518 2.20E-136 wgd
Cec04g0951 Cec-Chr4:29183375 Cec09g2072 Cec-Chr9:37762880 1.20E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0951 - - - 0.0