Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0954 ATGGGTAATCGTATTGGGAAGATTGGCCACTGTTTCGCCGCCGCCGGCGATATTTCCCGCCGTTATGATCCCGCCGACATTATTTCCGACCCACACGACGGGGGTTTCGGTCATTCCTTTTACTACCTCCCACCCGAACCACATACGCTCTCCTCCTCCAAAGATTTCTCCGACGACTACATCTCTCCGGCGACCATTTTCCGGTCGATTTCCGGCGCCTCTGTGAGTGCCAACGTCTCAACGCCGCTCTCCACTTCTCTTGTCGATCTCTATCCTTACAGCACGACGTTTGATCGGGCCGCAGCTTTCGATTGCTCGAATTCCTTCGCCTCCGTGCCGTTGCAGCCGGTGCCTCGCCAGTCGGTGTCGGGAAATTCCGGCGGATTCCCTTCTTCGGGTCCACTGGAGAGAGGGTTTTTATCTGGACCTTTGGCCGCCAGGACCTTCGAATCGGGTCCGATTGATCGAGTGGTTTATTCCGGTCCGATTGAGAAGGGTGGTGGACCCGAGAAATTGCAAAGGAACGTCTCTCATGGCGGCGTCGGAGACAGAGAACCGAAATCGAAAAGAAGAAGAAGAAGAAGAAGTCTTATTCGGATTCTGAAGAGAGCCATATCCAAAACCATTTCTCGAAACCAGAAGGCAGCGACTAAGAGAGTGAGAGAATCGGAATCATACAAGCATAATGAAAATGCTGCAGCTTCTGCAGCTCAGACTCAGAGCAGTGTCCATTTGAGCAGCCATGCGAGCTTGGCTCAGGAAGACGACGGCGATTATTTTCTCGGCGGTCAGAGCGTGCAGTGGGCGCAGGGGAAAGCCGGTGAGGATAGAGTTCACGTGGTGATATCGGAGGATAATGGTTGGGTTTTCGTCGGAATTTATGATGGATTCAACGGCCCTGATGCTCCTGATTACTTACTTGCTAATCTCTACACTGCCGTTCTTAAAGAACTCAAGGGTTTGATTTGGAGTGATAAGTTTGATTCGACTGCAACTTCATCTTCCATGAACTCATCCAACTCTGCTTCAATTGAGGAAGACGATCATGGAACAACTCACATGAAAAATCAGGAGAATGATCATCAATCGACAGAGAACTTCTCAGCACAAAATGGGGTTGTGAATTTGGAGGCTGATTCAGTGAGGACAAGAGAGAGAGTTTATAATACGAACTATAGGACGAGTCAGCTGATGAAGAAGGCTGATCAGAATCCAAAGAATTGGAAATGTGAATGGGAAAGGGAAAGATTAGGATTAGAGGGGAAGTTGAACAATAGACAGTTAGATCACCACCAAATATGGGATGAATCAACAGCAATCAATCATTCTGAGGTGTTGAATGCTCTGTCTCAAGCTTTGAGAAAAACAGAGGAAGCATATCTGCAGAATGCAGACAAGATGGTCACAAGAAATCCTGAGCTAGCTCTTATGGGTTCTTGTGTTTTGGTTATGTTGATGAGAGGAGAAGATGTCTACTTGATGAATGTAGGAGACAGCCGCGCAATTGTAGCACAGCAATTTGAACCGGATTTCGGGACTGGAAAGCCATACAGAGACTTAGAGAGAATCAACGAAGGAACACTACGAGTATTTGAATCCTCTAATGGAGTAGAGTTTGAAAGATTAAAAGCCTTGGCTTCCCATCAGCTTACGATGGACCACAGCACTTACACAGAGGAGGAAGTTCAGAGGATCAAGAATGCTCATCCTGATGACGCTTCCGCAATTATGAATGACAGGGTGAAAGGTTATTTGAAGATCACGCGGGCGTTCGGAGCTGGCTTTCTGAAACAGCCAAAGTGGAATGATGCATTGCTAGAGATGTTCAGAATAGACTATGTGGGAAATTCACCTTACATCACCTGTGATCCAACTCTGTGCCATTATAAACTCAGCCCAACAGACAGATTCTTGATTTTGTCCTCTGATGGACTCTACCAGTACATTACCAATGAAGAAGCTGTTGCCCAAGTAGAGTCCTTCATTGCTTCTTTTCCTGAAGGAGACCCTGCTCAAAATCTAATTGAAGAAGTATTGTTCCGAGCAGCTAAAAAATACGGAATGGACTTCCATGAGCTGCTTGATATCCCACAGGGGGAGCGGCGGAAGTACCACGATGACGTTTCGGTTTTCTTTCTAAAATATTCTTGGAAATGGAAGTCTTGGCCAGATTGCAAAAGCATCCATCACAGGCTGAGTTGTTCATTTGGTGGGTTCAGCAATGGAAAAAGTAGGGAGACAAAGGTAAGTGCCGCCCGCCAAATGCTGTGGAGAAGGAATAGATTGCTCAATTTGTCAACCAAGACAGACAGACTCGTCTCCCTTCAACAGGAGCAGAAAGGCAGGGAGAACATCAGATCTTGTATGAAGCTTGTCTATGATGGTGTCTGTTACTATCATAAATCCATGGAAAGGAGGACCAGCAGATCTCTTTTGACTTTTGCCACCGATGGATATTGA 2460 46.71 MGNRIGKIGHCFAAAGDISRRYDPADIISDPHDGGFGHSFYYLPPEPHTLSSSKDFSDDYISPATIFRSISGASVSANVSTPLSTSLVDLYPYSTTFDRAAAFDCSNSFASVPLQPVPRQSVSGNSGGFPSSGPLERGFLSGPLAARTFESGPIDRVVYSGPIEKGGGPEKLQRNVSHGGVGDREPKSKRRRRRRSLIRILKRAISKTISRNQKAATKRVRESESYKHNENAAASAAQTQSSVHLSSHASLAQEDDGDYFLGGQSVQWAQGKAGEDRVHVVISEDNGWVFVGIYDGFNGPDAPDYLLANLYTAVLKELKGLIWSDKFDSTATSSSMNSSNSASIEEDDHGTTHMKNQENDHQSTENFSAQNGVVNLEADSVRTRERVYNTNYRTSQLMKKADQNPKNWKCEWERERLGLEGKLNNRQLDHHQIWDESTAINHSEVLNALSQALRKTEEAYLQNADKMVTRNPELALMGSCVLVMLMRGEDVYLMNVGDSRAIVAQQFEPDFGTGKPYRDLERINEGTLRVFESSNGVEFERLKALASHQLTMDHSTYTEEEVQRIKNAHPDDASAIMNDRVKGYLKITRAFGAGFLKQPKWNDALLEMFRIDYVGNSPYITCDPTLCHYKLSPTDRFLILSSDGLYQYITNEEAVAQVESFIASFPEGDPAQNLIEEVLFRAAKKYGMDFHELLDIPQGERRKYHDDVSVFFLKYSWKWKSWPDCKSIHHRLSCSFGGFSNGKSRETKVSAARQMLWRRNRLLNLSTKTDRLVSLQQEQKGRENIRSCMKLVYDGVCYYHKSMERRTSRSLLTFATDGY 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29233427 29239028 + CePI673135_04g009540.1 Cec04g0954 200436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0954 819 MobiDBLite consensus disorder prediction 209 248 - -
Cec04g0954 819 ProSiteProfiles PPM-type phosphatase domain profile. 260 715 IPR001932 -
Cec04g0954 819 PANTHER PROTEIN PHOSPHATASE 2C 239 713 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Cec04g0954 819 MobiDBLite consensus disorder prediction 361 375 - -
Cec04g0954 819 Pfam Protein phosphatase 2C 425 686 IPR001932 -
Cec04g0954 819 Gene3D - 227 718 IPR036457 -
Cec04g0954 819 SMART PP2C_4 249 713 IPR001932 -
Cec04g0954 819 MobiDBLite consensus disorder prediction 330 345 - -
Cec04g0954 819 MobiDBLite consensus disorder prediction 229 248 - -
Cec04g0954 819 FunFam Protein phosphatase 2C 29 406 722 - -
Cec04g0954 819 MobiDBLite consensus disorder prediction 160 195 - -
Cec04g0954 819 MobiDBLite consensus disorder prediction 330 375 - -
Cec04g0954 819 CDD PP2Cc 434 710 IPR001932 -
Cec04g0954 819 MobiDBLite consensus disorder prediction 346 360 - -
Cec04g0954 819 SUPERFAMILY PP2C-like 271 712 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0954 Cec-Chr4:29233427 Cec10g0188 Cec-Chr10:1847266 1.80E-120 dispersed
Cec05g0719 Cec-Chr5:5934039 Cec04g0954 Cec-Chr4:29233427 6.50E-63 transposed
Cec02g2125 Cec-Chr2:38810974 Cec04g0954 Cec-Chr4:29233427 2.30E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0954 - - - 0.0