Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0957 ATGGTTAAGGCTGGGTTTGCAGGAGATGATGCTCCAAGGGCTGTCTTCCCTAGCATTGTTGGTCGTCCCCGTCATACAGGTGTTATGGTTGGAATGGGACAAAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCATGGAATTGTCAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAACGAACTTCGTGTCGCTCCGGAAGAGCATCCAGTTCTTCTCACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAAATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCACTTCCACATGCTATCCTACGTCTCGATCTTGCTGGCCGTGACCTGACCGATGCCCTCATGAAAATTTTGACTGAGCGTGGTTATTCATTCACCACCACAGCCGAGCGTGAAATTGTGAGAGATATGAAGGAAAAACTGGCCTACATTGCCCTTGACTATGAGCAAGAATTAGAAACCTCTAAGACCAGCTCTTCTGTTGAGAAGAGCTATGAGTTGCCTGACGGTCAGGTGATTACCATCGGCGCTGAGCGTTTCCGATGCCCAGAAGTCCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCCGGTATTCATGAGACAACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAGATCACGGCGTTGGCCCCGAGCAGCATGAAGATTAAGGTGGTTGCGCCACCTGAAAGGAAATACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGCCCTTCAATTGTCCACAGGAAATGCTTCTAA 1083 47.65 MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29257562 29259277 - CePI673135_04g009570.1 Cec04g0957 200439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0957 360 Gene3D - 1 354 - -
Cec04g0957 360 Pfam Actin 1 360 IPR004000 -
Cec04g0957 360 FunFam Major actin 242 323 - -
Cec04g0957 360 ProSitePatterns Actins signature 2. 341 349 IPR004001 -
Cec04g0957 360 Gene3D - 123 323 - -
Cec04g0957 360 PRINTS Actin signature 34 45 IPR004000 -
Cec04g0957 360 PRINTS Actin signature 100 113 IPR004000 -
Cec04g0957 360 PRINTS Actin signature 221 237 IPR004000 -
Cec04g0957 360 PRINTS Actin signature 11 20 IPR004000 -
Cec04g0957 360 PRINTS Actin signature 125 144 IPR004000 -
Cec04g0957 360 PRINTS Actin signature 46 68 IPR004000 -
Cec04g0957 360 SMART actin_3 1 360 IPR004000 -
Cec04g0957 360 FunFam Putative actin-related protein 5 324 352 - -
Cec04g0957 360 SUPERFAMILY Actin-like ATPase domain 132 360 IPR043129 -
Cec04g0957 360 ProSitePatterns Actins and actin-related proteins signature. 89 101 IPR020902 -
Cec04g0957 360 Gene3D Actin; Chain A, domain 4 165 256 - -
Cec04g0957 360 PANTHER ACTIN 4 352 IPR004000 GO:0005737(PANTHER)
Cec04g0957 360 FunFam Actin, muscle 165 256 - -
Cec04g0957 360 CDD NBD_sugar-kinase_HSP70_actin 59 166 - -
Cec04g0957 360 FunFam Actin, alpha skeletal muscle 1 161 - -
Cec04g0957 360 ProSitePatterns Actins signature 1. 38 48 IPR004001 -
Cec04g0957 360 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0957 Cec-Chr4:29257562 Cec10g1770 Cec-Chr10:32419855 8.50E-208 dispersed
Cec02g0074 Cec-Chr2:706262 Cec04g0957 Cec-Chr4:29257562 6.70E-205 transposed
Cec02g2127 Cec-Chr2:38824229 Cec04g0957 Cec-Chr4:29257562 7.50E-207 wgd
Cec04g0957 Cec-Chr4:29257562 Cec09g2081 Cec-Chr9:37827119 5.20E-205 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0957 K10355 - csv:101214246 714.916