Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0993 ATGGGTAACGCCCATGGCCACCGCAAGCATTTCAACCATGGCGTAAATACCTCTCCACCCACTAATAACGCTCCTTCTCCCTTCAATAAATACTCCTCATCTGAACCCACTTCTCGAAATTCCACCTCCACCTCGAACATGGAGTCCTTGCCCTACGCCCATGTTGATTCCAGCCTGCGAGCCCTTGCCGCTCAGGCTGAGGGCTTTGGCCGCTCTGCCATTGGTGGTCTCCATGGTTCTGTTTATTGTGTCACTAATTTAGCAGATGATGGTCCGGGATCACTTAGGTTTGGATGTCGTAAGAAAGAGCCCCTTTGGATTATCTTTGAAGTTTCGGGCACAATTCACTTGTCTACATATCTGAATGTATCATCGTACAAGACTGTAGACGGTCGTGGTCAAAGGATAAAACTTACAGGGAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATCATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAATTCAAATTAAGCCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGATGGGTTGATTGATATCACCCGAGGAAGCACGGATATCACTATTTCTAGGTGTCACTTCTCACAGCATGACAAGACAATGCTCATCGGAGCAGATCCCTCTCACATTGGCGACCGATGTATCCGTGTCACTATCCACCACTGTTTTTTCGACGGTACACGTCAACGGCATCCACGTGTTAGATATGCTCAAGTCCATCTATACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTAGAATCACAGATTTACTCTCAGTGCAACATATATGAAGCAGGAGCGAAAAAGGTGGCGTTTAAATATCTAACTGAAAAGGCAGCAGACAAAGAAGAACCCTCAAGTGGTTGCATATGGTCTGATGGAGACTTATTTGTAAATGGCACTCAAAGTGGGCTGTTGGCTGCAACTGCTGAACACAACTTGTTTCATCCTTCACAACACTACTCTGCTTGGACAGTGGAACCTCCAACAGATTCTCTTAAACACATTCTCCAACATTGTACTGGATGCCAAAACATTCCAAGACCAACTGATCTTCCCTTGGTACCTTAG 1134 45.5 MGNAHGHRKHFNHGVNTSPPTNNAPSPFNKYSSSEPTSRNSTSTSNMESLPYAHVDSSLRALAAQAEGFGRSAIGGLHGSVYCVTNLADDGPGSLRFGCRKKEPLWIIFEVSGTIHLSTYLNVSSYKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGAKKVAFKYLTEKAADKEEPSSGCIWSDGDLFVNGTQSGLLAATAEHNLFHPSQHYSAWTVEPPTDSLKHILQHCTGCQNIPRPTDLPLVP 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29581621 29584891 - CePI673135_04g009930.1 Cec04g0993 200475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0993 377 SMART amb_all 77 290 IPR002022 -
Cec04g0993 377 Pfam Pectate lyase 121 283 IPR002022 -
Cec04g0993 377 MobiDBLite consensus disorder prediction 14 48 - -
Cec04g0993 377 Gene3D - 51 358 IPR012334 -
Cec04g0993 377 PANTHER PECTATE LYASE 18-RELATED 57 349 IPR045032 GO:0030570(InterPro)
Cec04g0993 377 MobiDBLite consensus disorder prediction 1 48 - -
Cec04g0993 377 PRINTS Pollen allergen Amb family signature 245 264 IPR018082 -
Cec04g0993 377 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
Cec04g0993 377 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Cec04g0993 377 ProSiteProfiles Zinc finger integrase-type profile. 324 365 IPR003308 GO:0008270(InterPro)
Cec04g0993 377 SUPERFAMILY Pectin lyase-like 65 372 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0993 Cec-Chr4:29581621 Cec08g0815 Cec-Chr8:19998474 1.90E-40 dispersed
Cec04g0993 Cec-Chr4:29581621 Cec05g2352 Cec-Chr5:34761519 1.20E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0993 K01728 - csv:101219724 714.531