Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1013 ATGAGTGCTCATGCCGGCAGGCAGAGAGAGTTAAGAGAAACAAGTCACCACGCACAGGATGGTAATGGAAGCGTGAATAATGGTGTATCTGGCAGGGAACAGAGCCCGGTTGAGGAAAATGAGTTGAAGGTCAATGGATTAACTAGAAATACGGAGGATGGTCGAAAAAACACTGTTCATACCCAGGAAATTCTGCAAATACAACAGCAGCAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTCCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTCGAAAATGATGACTCCACTCGGCATCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATTGCGGCTGCAAATGGACTACATGCATGGAAGATGCTAGAAGATCTGACAAATCACATAGATCTTGTCCTAACAGAGGTGGTCATGCCTTGTTTATCTGGCATTGGTCTTTTATGCAAGATTATGAACCATAAAACGAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAACTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGTTCTAGCGGCAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGACAACAACACTGGGAGCAACGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAACATTGGTGATGGAAGTGATGATGGCAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCAAAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGCCAATAATGCTCCAATTCTTTTGACAGCAGGGTGCCAGGTGCAGAAAAAGCAACTTGAAACTGTCACCTTTGGTAAAGTTGAACTAGGCATGCACAGGAATCTTGATTTACAACTTGAACTCTCTACGGAACATCCAACCAAGCTAGTTAACAGAAAACATAACATTAGGCTTGAGATTGGGTCCAGTGGATTCAACGAGCAGTTCAACAAAGGACATCTTGACCTCAACTCTGAGAGCCCATCCAGCAAACTGAAGTATGAGGAAACAACTGTTACTGGTCTTGCCACCACTCTTTCTGATTGTAAGATGAATGTTGCTGTGTTTGAGGCGCCAAGCAGCCATCCCAAGACCACAGACATTAAGAATAAAGATGTTACAGATTCAGAGGATTTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACGACAGGGAAAGCGGTACAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCAACGGGAAATGCTGGAAGTAACTCTGCACCTGTTAATGGCTTAGAAGTTACAAATCAAGAGAACATGCAAGATATTCGATCTCATTCAAGTGGTAACCCTCCCAATCAATGCTCAAATGGAGATAGCAATAATATTGACATGGGGTCCACTACTAATAATGCATTTTCCAAGTCCGTAGTTACTAATAACAAGTCAGCAATGGCATCAACAGTCAACTGTTTGTATCCATCGGGAGCTTTCCAACCTGTTAAGAATGACAGTCAATCTGTTCCACAGCAAGCTGATAATGTCAATAATGTCACAACTACAACAATGCAAGCTCAGTCTAATTTTGTGCACAGGGAATCTCAAATGCAGCAACTTTGTCACCCGTTTGATCCCACTCATCAGCTTGTCCACAATATTCAACGATTGTCATCTGAGCATAATGATTTTTCATTAAAGAAAATATCTGCAGCTCCCACGCATTGTGGGTCAACCAATGTTTTAAATGGTTCTTTAGAAGGTAATGCAGCAAACTATAGTGTGAACGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGTAGCACTGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGTCGAAGTGGGGATGCCAGTGGGAGTGGGAGTGGGAGTGGGAGTGGAAACAAAATGGACCAGAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGGAAGGAAAGATGCTTTCGTAAAAAGGTCCGATACCAAAGCAGAAAGAGATTAGCAGAACAGAGACCCCGTGTCAGGGGACAGTTTGTGAGACAAAACACGAGCGAAAACACGAGCAATGCAGGAGATGGCTAA 2349 43.04 MSAHAGRQRELRETSHHAQDGNGSVNNGVSGREQSPVEENELKVNGLTRNTEDGRKNTVHTQEILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCLSGIGLLCKIMNHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNNTGSNDEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDQKRERPDSTCAQVVHSNADAFANNAPILLTAGCQVQKKQLETVTFGKVELGMHRNLDLQLELSTEHPTKLVNRKHNIRLEIGSSGFNEQFNKGHLDLNSESPSSKLKYEETTVTGLATTLSDCKMNVAVFEAPSSHPKTTDIKNKDVTDSEDFPSLELGLKRLRGVQTTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTGNAGSNSAPVNGLEVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSVVTNNKSAMASTVNCLYPSGAFQPVKNDSQSVPQQADNVNNVTTTTMQAQSNFVHRESQMQQLCHPFDPTHQLVHNIQRLSSEHNDFSLKKISAAPTHCGSTNVLNGSLEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGRSGDASGSGSGSGSGNKMDQNKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNAGDG 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29723345 29730438 - CePI673135_04g010130.1 Cec04g1013 200495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1013 782 Gene3D - 88 334 - -
Cec04g1013 782 MobiDBLite consensus disorder prediction 18 34 - -
Cec04g1013 782 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160(InterPro)
Cec04g1013 782 MobiDBLite consensus disorder prediction 213 295 - -
Cec04g1013 782 MobiDBLite consensus disorder prediction 471 541 - -
Cec04g1013 782 SUPERFAMILY CheY-like 87 213 IPR011006 -
Cec04g1013 782 PANTHER TWO-COMPONENT RESPONSE REGULATOR 72 356 IPR045279 GO:0009736(InterPro)
Cec04g1013 782 MobiDBLite consensus disorder prediction 1 59 - -
Cec04g1013 782 SMART REC_2 89 204 IPR001789 GO:0000160(InterPro)
Cec04g1013 782 ProSiteProfiles CCT domain profile. 728 770 IPR010402 GO:0005515(InterPro)
Cec04g1013 782 MobiDBLite consensus disorder prediction 669 782 - -
Cec04g1013 782 MobiDBLite consensus disorder prediction 701 730 - -
Cec04g1013 782 MobiDBLite consensus disorder prediction 738 753 - -
Cec04g1013 782 MobiDBLite consensus disorder prediction 669 693 - -
Cec04g1013 782 MobiDBLite consensus disorder prediction 213 230 - -
Cec04g1013 782 FunFam Two-component response regulator-like PRR37 89 247 - -
Cec04g1013 782 CDD psREC_PRR 91 194 - -
Cec04g1013 782 MobiDBLite consensus disorder prediction 474 541 - -
Cec04g1013 782 MobiDBLite consensus disorder prediction 45 59 - -
Cec04g1013 782 MobiDBLite consensus disorder prediction 1 17 - -
Cec04g1013 782 Pfam CCT motif 728 770 IPR010402 GO:0005515(InterPro)
Cec04g1013 782 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160(InterPro)
Cec04g1013 782 MobiDBLite consensus disorder prediction 261 276 - -
Cec04g1013 782 MobiDBLite consensus disorder prediction 765 782 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0007 Cec-Chr1:83529 Cec04g1013 Cec-Chr4:29723345 1.80E-42 dispersed
Cec01g1751 Cec-Chr1:32095505 Cec04g1013 Cec-Chr4:29723345 2.40E-13 dispersed
Cec04g1013 Cec-Chr4:29723345 Cec05g1819 Cec-Chr5:30140620 5.10E-16 dispersed
Cec04g1013 Cec-Chr4:29723345 Cec06g1400 Cec-Chr6:27465332 7.20E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29318 PF00072 Response_reg 1.60E-20 CL0304 Cec TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1013 K12129 - csv:101210765 1358.58