Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g1020 | ATGTTGGACCTCAATCTCTGTATTCTCTCCGGAGATTCCTCTTCCGGTGGAGCTGGTTTAAATCCCTTCAATCTTTCCGCTCCCGGAGTTCAGAGTCCCATTTCATCCTCCGTCGTCAACGCCGATCAGTCCAACGTCATTGGCGATCACGGCTCCTCTTCCAACGCTGATTGTGGGTTCACTTTCTCTTTCAGCATCCTCAACAACAGCAACGACGATCAACGCGGCCGGACTGTCGCCGGCAGGTTTTCCTCCGACGTCTATTCACAGAGGAAATGGACGGTTCAACAGTCCGTTCATCCGGCGAAAAAGGGCCGGCGAGGCCCGAAATCAAGAAGCTCCGAGTATCGCGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAGTCGCATATCTGGGATAGCGGGAAACAAATCTATTTGGGTGGTTTTGATACTGCCCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATAAAGTTTCGAGGGGTTCATGCTGATATAAATTTCAATATCAGTGACTACAGTGAAGAGATTAAACAGATGAGTAATTTTAGTAAAGAGGAGTTTGTTCATATTCTTCGAAGGCAGAGCACTGGATTTTCAAGAGGGAGTTCTAAATACAGAGGAGTTACTCTGCACAAGTGTGGGAGATGGGAGGCTCGAATGGGACAGTTCTTGGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATATAATGGAAGGGAAGCTGTTACCAATTTTGATCAGAGTTCCTATGAGATGGAGATTGCTTTTGAATCTCAAAACCAAGACGTGGGTGATATTGACTTGAACTTGGGCATTGCCCCTCCTTGTCCATCTGAAGACCAAAAGGACAACCTGAATGTCTGTGCTCCAAATTTCTGTAGCTTAAATAAATCAGATTCTGATAGATCTGAGTTGATAATGCTTGAAAACCATTCTTCTGTGGCTGTGAGAGCACATCCTTCTTTTATGAGTTGTCCCAATTTCTTTCCTACCTACCAGGGAAGAGCAATGGAGAAGATAATGGAAGTTGAAACTTTACCGAACTGGGGGTGGCGCCAGATCCCAATCTCCTATGGCGGAGCAACTTCCGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCGGCTGCCCAGCTTCCTCCCCCCTCTCCTCCCCATCTCCTTCGTCCAGCGCCGCCGTTCCTCCGCTACCATTTTCCCCCCACTAACAGCGTTCCTCATTTCTACTGCAGCACCTGA | 1305 | 47.74 | MLDLNLCILSGDSSSGGAGLNPFNLSAPGVQSPISSSVVNADQSNVIGDHGSSSNADCGFTFSFSILNNSNDDQRGRTVAGRFSSDVYSQRKWTVQQSVHPAKKGRRGPKSRSSEYRGVTYYRRTGRWESHIWDSGKQIYLGGFDTAHSAARAYDRAAIKFRGVHADINFNISDYSEEIKQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEIAFESQNQDVGDIDLNLGIAPPCPSEDQKDNLNVCAPNFCSLNKSDSDRSELIMLENHSSVAVRAHPSFMSCPNFFPTYQGRAMEKIMEVETLPNWGWRQIPISYGGATSVPFFSTAASSGFPSSPAAQLPPPSPPHLLRPAPPFLRYHFPPTNSVPHFYCST | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 29793912 | 29798512 | + | CePI673135_04g010200.1 | Cec04g1020 | 200502 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g1020 | 434 | Pfam | AP2 domain | 206 | 256 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1020 | 434 | Pfam | AP2 domain | 115 | 163 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1020 | 434 | PRINTS | Ethylene responsive element binding protein signature | 208 | 219 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1020 | 434 | PRINTS | Ethylene responsive element binding protein signature | 246 | 266 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1020 | 434 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 72 | 298 | - | - | |
Cec04g1020 | 434 | ProSiteProfiles | AP2/ERF domain profile. | 207 | 264 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1020 | 434 | CDD | AP2 | 206 | 266 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1020 | 434 | SUPERFAMILY | DNA-binding domain | 206 | 265 | IPR016177 | GO:0003677(InterPro) | |
Cec04g1020 | 434 | Gene3D | AP2/ERF domain | 206 | 265 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1020 | 434 | Gene3D | AP2/ERF domain | 115 | 173 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1020 | 434 | SUPERFAMILY | DNA-binding domain | 114 | 173 | IPR016177 | GO:0003677(InterPro) | |
Cec04g1020 | 434 | FunFam | AP2-like ethylene-responsive transcription factor | 206 | 266 | - | - | |
Cec04g1020 | 434 | MobiDBLite | consensus disorder prediction | 95 | 115 | - | - | |
Cec04g1020 | 434 | FunFam | AP2-like ethylene-responsive transcription factor | 114 | 173 | - | - | |
Cec04g1020 | 434 | ProSiteProfiles | AP2/ERF domain profile. | 115 | 171 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1020 | 434 | SMART | rav1_2 | 207 | 270 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1020 | 434 | SMART | rav1_2 | 115 | 177 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1020 | 434 | CDD | AP2 | 114 | 173 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g1020 | Cec-Chr4:29793912 | Cec04g1386 | Cec-Chr4:33487867 | 1.30E-85 | dispersed | |
Cec10g2067 | Cec-Chr10:35404544 | Cec04g1020 | Cec-Chr4:29793912 | 1.10E-103 | wgd | |
Cec02g2188 | Cec-Chr2:39317021 | Cec04g1020 | Cec-Chr4:29793912 | 1.90E-85 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29319 | PF00847 | AP2 | 1.40E-10 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g1020 | K09284 | - | csv:101211008 | 682.559 |