Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1020 ATGTTGGACCTCAATCTCTGTATTCTCTCCGGAGATTCCTCTTCCGGTGGAGCTGGTTTAAATCCCTTCAATCTTTCCGCTCCCGGAGTTCAGAGTCCCATTTCATCCTCCGTCGTCAACGCCGATCAGTCCAACGTCATTGGCGATCACGGCTCCTCTTCCAACGCTGATTGTGGGTTCACTTTCTCTTTCAGCATCCTCAACAACAGCAACGACGATCAACGCGGCCGGACTGTCGCCGGCAGGTTTTCCTCCGACGTCTATTCACAGAGGAAATGGACGGTTCAACAGTCCGTTCATCCGGCGAAAAAGGGCCGGCGAGGCCCGAAATCAAGAAGCTCCGAGTATCGCGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAGTCGCATATCTGGGATAGCGGGAAACAAATCTATTTGGGTGGTTTTGATACTGCCCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATAAAGTTTCGAGGGGTTCATGCTGATATAAATTTCAATATCAGTGACTACAGTGAAGAGATTAAACAGATGAGTAATTTTAGTAAAGAGGAGTTTGTTCATATTCTTCGAAGGCAGAGCACTGGATTTTCAAGAGGGAGTTCTAAATACAGAGGAGTTACTCTGCACAAGTGTGGGAGATGGGAGGCTCGAATGGGACAGTTCTTGGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATATAATGGAAGGGAAGCTGTTACCAATTTTGATCAGAGTTCCTATGAGATGGAGATTGCTTTTGAATCTCAAAACCAAGACGTGGGTGATATTGACTTGAACTTGGGCATTGCCCCTCCTTGTCCATCTGAAGACCAAAAGGACAACCTGAATGTCTGTGCTCCAAATTTCTGTAGCTTAAATAAATCAGATTCTGATAGATCTGAGTTGATAATGCTTGAAAACCATTCTTCTGTGGCTGTGAGAGCACATCCTTCTTTTATGAGTTGTCCCAATTTCTTTCCTACCTACCAGGGAAGAGCAATGGAGAAGATAATGGAAGTTGAAACTTTACCGAACTGGGGGTGGCGCCAGATCCCAATCTCCTATGGCGGAGCAACTTCCGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCGGCTGCCCAGCTTCCTCCCCCCTCTCCTCCCCATCTCCTTCGTCCAGCGCCGCCGTTCCTCCGCTACCATTTTCCCCCCACTAACAGCGTTCCTCATTTCTACTGCAGCACCTGA 1305 47.74 MLDLNLCILSGDSSSGGAGLNPFNLSAPGVQSPISSSVVNADQSNVIGDHGSSSNADCGFTFSFSILNNSNDDQRGRTVAGRFSSDVYSQRKWTVQQSVHPAKKGRRGPKSRSSEYRGVTYYRRTGRWESHIWDSGKQIYLGGFDTAHSAARAYDRAAIKFRGVHADINFNISDYSEEIKQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEIAFESQNQDVGDIDLNLGIAPPCPSEDQKDNLNVCAPNFCSLNKSDSDRSELIMLENHSSVAVRAHPSFMSCPNFFPTYQGRAMEKIMEVETLPNWGWRQIPISYGGATSVPFFSTAASSGFPSSPAAQLPPPSPPHLLRPAPPFLRYHFPPTNSVPHFYCST 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29793912 29798512 + CePI673135_04g010200.1 Cec04g1020 200502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1020 434 Pfam AP2 domain 206 256 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1020 434 Pfam AP2 domain 115 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1020 434 PRINTS Ethylene responsive element binding protein signature 208 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1020 434 PRINTS Ethylene responsive element binding protein signature 246 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1020 434 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 72 298 - -
Cec04g1020 434 ProSiteProfiles AP2/ERF domain profile. 207 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1020 434 CDD AP2 206 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1020 434 SUPERFAMILY DNA-binding domain 206 265 IPR016177 GO:0003677(InterPro)
Cec04g1020 434 Gene3D AP2/ERF domain 206 265 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1020 434 Gene3D AP2/ERF domain 115 173 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1020 434 SUPERFAMILY DNA-binding domain 114 173 IPR016177 GO:0003677(InterPro)
Cec04g1020 434 FunFam AP2-like ethylene-responsive transcription factor 206 266 - -
Cec04g1020 434 MobiDBLite consensus disorder prediction 95 115 - -
Cec04g1020 434 FunFam AP2-like ethylene-responsive transcription factor 114 173 - -
Cec04g1020 434 ProSiteProfiles AP2/ERF domain profile. 115 171 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1020 434 SMART rav1_2 207 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1020 434 SMART rav1_2 115 177 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1020 434 CDD AP2 114 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1020 Cec-Chr4:29793912 Cec04g1386 Cec-Chr4:33487867 1.30E-85 dispersed
Cec10g2067 Cec-Chr10:35404544 Cec04g1020 Cec-Chr4:29793912 1.10E-103 wgd
Cec02g2188 Cec-Chr2:39317021 Cec04g1020 Cec-Chr4:29793912 1.90E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29319 PF00847 AP2 1.40E-10 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1020 K09284 - csv:101211008 682.559