Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1030 ATGATGTCTGGTGTTGAATTTTCTGTTTCTTCTAATTCTAATGGAGAATTTGCAGATCATCAACAACAAAATTCTCAACTTTATCATCATCTTCCTCATAACCCTAACCCTAACCCTAATCCAAATCTTGATTCTTCTTTTGCTCCTCCTACTCTCCCCAAGAAGAAGAGAAACTTGCCAGGAAAACCAGATCCAGATGCTGAGGTAATTGCTTTATCTCCCAACACTTTAATGGCTACAAACAGATTCATATGTGAAATATGCAATAAAGGGTTTCAAAGGGACCAAAATTTGCAACTTCATAGAAGAGGGCATAATTTGCCATGGAAGCTAAGGCAAAGAAGCAATAAAGAAGTAGTGAAGAAGAAAGTATATATTTGCCCTGAAAAATGTTGTGTTCATCATGATCCAAGCAGAGCCCTTGGGGACCTAACTGGAATTAAAAAACATTTCAGTAGAAAACATGGGGAGAAAAAATGGAAGTGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAGACTTGTGGTACTAGAGAGTACAAATGTGACTGTGGAACACTATTTTCCAGGAAAGACAGCTTCATAACTCACAGGGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAAGCTAATATCATCTGTTACAGCAGCAAATTCAAGACTTAATTTCATTGCCAATAATAATAATAATTCAATCAACCAATCTCTTTTCAATTCCCAATTACAAGACCATAATTTTGAATCATCACCTGCTTTCCCCCAATTTCTTCCACCCTGTAATAATCTCTACCAAATCTCAAACCAAATTTTGAGTTTGAATAACAAAAACAATGCTTCAGAAACAGCCACCATGAACCTCACTCTGTCCTCCTCTGCCAACAAACAACAACAAGCTTATAACTTGCCATCGTTTTGCTCCGGTGGCGGTGGTGGAGGGATGTCGGCGACGGCACTGCTGCTGAAAGCGGCGGAATTGGGGTCGACAAAGAGTAAAGATAACTCATTTTCTTCAGGGAGTAACAGTGTGGGAGTAGTTATGAGTTCATCTCCAAATAATATTTCATTTGAGAGCGGTAATTGTAATTATTATGGGGGAAAGGGAGATGGGTTGAGGGATTTTTTTGGGAGGAAGGAGGGAGAAGGGAATGATCATCAGTTGATTATTCCATTAATGGAGATGACCAAATTTGCTAACTCTATGAGCTCTGAGATGGGTTTGAGCCAATTCATTGGCAATAATAATCCGGGATAA 1275 38.75 MMSGVEFSVSSNSNGEFADHQQQNSQLYHHLPHNPNPNPNPNLDSSFAPPTLPKKKRNLPGKPDPDAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVKKKVYICPEKCCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESAKLISSVTAANSRLNFIANNNNNSINQSLFNSQLQDHNFESSPAFPQFLPPCNNLYQISNQILSLNNKNNASETATMNLTLSSSANKQQQAYNLPSFCSGGGGGGMSATALLLKAAELGSTKSKDNSFSSGSNSVGVVMSSSPNNISFESGNCNYYGGKGDGLRDFFGRKEGEGNDHQLIIPLMEMTKFANSMSSEMGLSQFIGNNNPG 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29882504 29885989 + CePI673135_04g010300.1 Cec04g1030 200512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1030 424 FunFam protein indeterminate-domain 5, chloroplastic-like 138 217 - -
Cec04g1030 424 MobiDBLite consensus disorder prediction 1 68 - -
Cec04g1030 424 MobiDBLite consensus disorder prediction 1 33 - -
Cec04g1030 424 FunFam protein indeterminate-domain 12-like 62 131 - -
Cec04g1030 424 SUPERFAMILY beta-beta-alpha zinc fingers 82 180 IPR036236 -
Cec04g1030 424 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 121 155 - -
Cec04g1030 424 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 159 183 - -
Cec04g1030 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Cec04g1030 424 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 348 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cec04g1030 424 Gene3D Classic Zinc Finger 63 136 - -
Cec04g1030 424 Gene3D Classic Zinc Finger 139 217 - -
Cec04g1030 424 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Cec04g1030 424 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 186 224 - -
Cec04g1030 424 SMART c2h2final6 160 180 IPR013087 -
Cec04g1030 424 SMART c2h2final6 83 105 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1030 Cec-Chr4:29882504 Cec07g1494 Cec-Chr7:30546187 8.50E-90 dispersed
Cec03g1765 Cec-Chr3:35936537 Cec04g1030 Cec-Chr4:29882504 3.40E-86 transposed
Cec09g0593 Cec-Chr9:5162250 Cec04g1030 Cec-Chr4:29882504 2.60E-82 transposed
Cec10g2045 Cec-Chr10:35188726 Cec04g1030 Cec-Chr4:29882504 3.10E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29321 PF12171 zf-C2H2_jaz 6.00E-05 CL0361 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1030 K25870 - csv:101221389 603.594