Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1039 ATGGCCAAGGACTCTGATGCCGGAGGCTTCGCCGCCAAGGACTACCACGACCCTCCACCCGCTCCTTTCATCGACGCCAACGAGTTCACTCAGTGGTCGTTTTACAGAGCCATCATCGCTGAGTTCATAGCCACTCTCCTCTTCTTGTACGTCACTGTTCTTACCGTCATTGGCTACAGTAGCCAGTCCGACATCAAAAACGGCGGCCAAATCTGCGGCGGTGTTGGCATTCTCGGCATCGCTTGGGCTTTCGGTGGAATGATCTTCGTTCTCGTCTACTGTACCGCTGGAATTTCCGGTGGGCATATCAATCCGGCGGTGACATTTGGGCTGTTTTTGGCTCGGAAAGTGTCGTTGGTGAGAGCTGTTTTGTACATGGTTGCTCAATGTCTTGGTGCCATTTGTGGATGTGCTTTGGTCAAATCGTTTCAAAAGGGTCTTTACAATCGCTACGGCGGTGGAGCCAATTCTCTCGCCGACGGCTACAGTACTGGCACTGGCTTAGGCGCTGAGATTATCGGAACTTTCGTTCTTGTTTACACTGTCTTCTCTGCTACAGATCCCAAGAGAAGTGCTAGAGATTCTCACGTTCCTGTTCTAGCTCCACTGCCAATTGGGTTTGCTGTGTTTATGGTTCATCTAGCCACCATTCCGGTTACCGGCACCGGTATTAACCCTGCTCGAAGCTTCGGTGCTGCAGTTGTCTTCAACCAGAGCAAGCCATGGAATGACCATTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCAATTGCTGCATTTTATCACCAATTCATTTTGAGAGCTGGAGCTGTGAAAGCTTTGGGATCATTCAGGAGTACACACAGTGTTTGA 855 50.29 MAKDSDAGGFAAKDYHDPPPAPFIDANEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYSSQSDIKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCALVKSFQKGLYNRYGGGANSLADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVVFNQSKPWNDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSTHSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29941518 29942669 - CePI673135_04g010390.1 Cec04g1039 200521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1039 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Cec04g1039 284 CDD MIP 36 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1039 284 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1039 284 NCBIfam MIP family channel protein 40 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1039 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cec04g1039 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Cec04g1039 284 FunFam Probable aquaporin PIP1-2 21 282 - -
Cec04g1039 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Cec04g1039 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1039 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1039 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1039 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1039 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1039 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1039 Cec-Chr4:29941518 Cec05g2318 Cec-Chr5:34482005 3.20E-133 dispersed
Cec04g1036 Cec-Chr4:29927490 Cec04g1039 Cec-Chr4:29941518 6.40E-82 proximal
Cec04g1037 Cec-Chr4:29930098 Cec04g1039 Cec-Chr4:29941518 1.50E-30 proximal
Cec04g1039 Cec-Chr4:29941518 Cec04g1040 Cec-Chr4:29954846 1.20E-143 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1039 K09872 - csv:101214884 549.28