Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1040 ATGTCGAAGGATATTGAAGCTGGAGGGCGTGGTGGGTTTAGTGGGAAGGATTACGAAGATCCGCCGCCGGCCCCATTGATCGACGCTCAGGAGTTTGCCCAGTGGTCATTTTATAGAGCCATTATAGCAGAGTTTGTTGCTACTCTTTTGTTCTTGTATGTTACTGTTCTTACTGTCATTGGGTATAAAGTTCAGAGTGATGATAAGAATGGAGGCGAGATTTGTGGTGGCGTCGGTATTTTGGGCATTGCTTGGGCCTTTGGTGGCATGATTTTTGTTCTTGTTTACTGCACCGCCGGGATTTCTGGAGGACATATTAATCCAGCGGTGACTTTTGGGTTGTTCTTGGCTCGGAAAGTGTCTTTAATTCGAGCAATCCTTTACATGGTGGCTCAATGTTTAGGCGCCATTTGTGGGTGTGCATTGGTGAAATCATTCCAGAAGGCTCATTACAATGAGTACGGCGGTGGAGCCAATTCTCTCGCCGATGGGTACAGCACGGGCACCGGCTTAGCCGCGGAGATCATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGACCCGAAGAGAAACGCTAGAGATTCTCACGTTCCAGTTTTGGCTCCACTCCCAATTGGATTCGCAGTGTTTATGGTTCATTTGGCTACCATTCCGATCACCGGCACCGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCCGTGATCTTTAACAAAGACAAGCCCTGGGATGATCAGTGGATCTTTTGGGTTGGGCCGTTCATTGGAGCTGCCATTGCTGCAATTTATCATCAAATCGTGTTGAGGGCAGGGGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCCACTGCCGTATGA 864 49.07 MSKDIEAGGRGGFSGKDYEDPPPAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDDKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGCALVKSFQKAHYNEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIVLRAGAVKALGSFRSSTAV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29954846 29961583 + CePI673135_04g010400.1 Cec04g1040 200522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1040 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Cec04g1040 287 MobiDBLite consensus disorder prediction 1 21 - -
Cec04g1040 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Cec04g1040 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Cec04g1040 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1040 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1040 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1040 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1040 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1040 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1040 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cec04g1040 287 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1040 287 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1040 287 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1040 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2224 Cec-Chr2:39638513 Cec04g1040 Cec-Chr4:29954846 5.80E-135 dispersed
Cec04g0716 Cec-Chr4:26302161 Cec04g1040 Cec-Chr4:29954846 8.40E-12 dispersed
Cec04g1036 Cec-Chr4:29927490 Cec04g1040 Cec-Chr4:29954846 5.70E-83 dispersed
Cec04g1037 Cec-Chr4:29930098 Cec04g1040 Cec-Chr4:29954846 1.10E-30 dispersed
Cec04g1040 Cec-Chr4:29954846 Cec05g2318 Cec-Chr5:34482005 4.20E-133 dispersed
Cec04g1039 Cec-Chr4:29941518 Cec04g1040 Cec-Chr4:29954846 1.20E-143 tandem
Cec04g1040 Cec-Chr4:29954846 Cec04g1041 Cec-Chr4:29965779 4.40E-122 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1040 K09872 - csv:101215366 526.168