Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1044 ATGCCTACTTCTAGTAGATGGAGATCAGTGACCACAGTAAGATTCCAAGACGAAGAACTCGAAAATGGCGAAGCAGGGAGGAGGAGAAAGAGAGGAAGAAGGAAATGTGAGGGAATGTTTTGTGATTCAGATCAAGATTATGATGTGGTGAAGGGAATGGTACTAGATCCAAATCTGCCCATACTGAACAAATGGAATAGGGTTTTTCTGGTGGCTTGTTTGGTGTCACTATTTGTGGACCCTGTGTTCTTCTTGTTGCCGGTGGTGAACGTGGAGGAGGGGTGCGTGGAAATGAGCGGAGCGTTGGGGGTGGCGTTGACAGTGGTCCGGTCCATGGCGGATGTGTTCTACATAACACACATACTGGTTAGGTTTAGGACAGCTTACGTAGCTCCCTCGTCCAGGATCTTTGGAAGAGGAGAGCTCGTGATTCACCCTTCTAAGATTGCTGCTAACTATCTCGTTTTCGAGTTTTGGCTTCATTTTGTTGCTGCATTACCTCTTCCACAGGCATTCGTATGGGTTGCAATACCAAAAATGAGGGCGTGGAGTTACTTTGTTCGTTTCTCCATTTTGTTACAATACCTTCTGAGGTTGTATCTCATCTTCCCTTTATCTGATCAAATCATTAAGGCCACTGGAGTTTTGATGAAAACAGCTTGGGTTGGAGCTGGTTATAACCTAATGCTCTTTATGCTAGCAAGCCATGTTTTGGGATCATGTTGGTACCTTTTATCCATAGGAAGACAAATGGAATGCTGGAAAAAAGTGTGCAATTTGGGGCAGTATTTGGATTGCCAATATGAGCTTTTTTATTGTAAAGCTTTACAGAGAGATTCAAATAAAGCTGCTTGGTTTCAACATTATCAAGCAACCAATATTTCAAATTTATGTCATCCAAGTGCCACCAATTTCTTTCACTTTGGGATCTTTTCTGATTCTTTTGCTTCAACTTCTTCCCCCTTCTTCACTAGGTACTTGTATTGTTTCTGGTGGGGATTGAGGAATTTAAGCTCTCTAGGACAAAATTTGCTAACAAGTAGCAATGTGGGAGAAATCAATTTCGCCATTGTGATTGCCATTGTTGGGTTGGTGCTTTTCGCTCTTCTTATTGGAAATATGCAAACTTATCTCCAATCAACGACATTAAGACTAGAAGAATGGAGAGTAAGAAGAAGAGACACGGAGCAATGGATGCAACACAGACAATTACCAAATCAATTAAAACAAAGCGTAAGAAATTACGAACAATTCCGATGGATGGCAACTCACGGCGTCGACGAACAACACATTCTAAAATCCCTTCCTCTCGATCTCCGACGACAAATCAAACGCCATCTCTGTCTCGATCTCCTCCGTCAAGTTCCTCTGTTCGACGAAATGGAAGAAAGAATGTTAGACGCAATTTGCGAGCGATTAAAACCCTGTTTGAGCACTTCCAACACTTGTTTACTTCGAGAAGGCGACCCAGTTAATGAAATGTTGTTTATAATCCGTGGCCATCTGGATTCCCACACCACCAACGGCGGCCGGACTGGGTTTTTCAATTCGAGCCGTCTTGGGCCGAGTGATTTCTGCGGTGAGGAGTTGCTTCCTTGGGCGTTGGATGATCCTGGGGCGGCAGCGGTGTTGCCGTCTTCCACGAGGACGGTGACGGCGGTGACGGAGGTGGAAGGGTTTGCGCTTGTGGCGGAGGATTTGAAGTTTGTGGCAGCGCAATTTCGGAGGCTGCATAGTAAGCAGATTAGGTGTACTTTTAGGTTTCACTCGCAGCAGTGGCGGACGTGGGCGGCGTGTTTTATTCAGGCGGCGTGGGTTAGGTATAAGCGGCGGCAGAAGAAGGAAGGTGAGATTAATGTTGTGAGGAAGATGAGTGTTGTTCGTCATAGGTCGTTGGTGAAGCCGCTTCAAATTGATTTCTCGGTGGAAGATAGATGA 1938 45.1 MPTSSRWRSVTTVRFQDEELENGEAGRRRKRGRRKCEGMFCDSDQDYDVVKGMVLDPNLPILNKWNRVFLVACLVSLFVDPVFFLLPVVNVEEGCVEMSGALGVALTVVRSMADVFYITHILVRFRTAYVAPSSRIFGRGELVIHPSKIAANYLVFEFWLHFVAALPLPQAFVWVAIPKMRAWSYFVRFSILLQYLLRLYLIFPLSDQIIKATGVLMKTAWVGAGYNLMLFMLASHVLGSCWYLLSIGRQMECWKKVCNLGQYLDCQYELFYCKALQRDSNKAAWFQHYQATNISNLCHPSATNFFHFGIFSDSFASTSSPFFTRYLYCFWWGLRNLSSLGQNLLTSSNVGEINFAIVIAIVGLVLFALLIGNMQTYLQSTTLRLEEWRVRRRDTEQWMQHRQLPNQLKQSVRNYEQFRWMATHGVDEQHILKSLPLDLRRQIKRHLCLDLLRQVPLFDEMEERMLDAICERLKPCLSTSNTCLLREGDPVNEMLFIIRGHLDSHTTNGGRTGFFNSSRLGPSDFCGEELLPWALDDPGAAAVLPSSTRTVTAVTEVEGFALVAEDLKFVAAQFRRLHSKQIRCTFRFHSQQWRTWAACFIQAAWVRYKRRQKKEGEINVVRKMSVVRHRSLVKPLQIDFSVEDR 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29986672 29990414 + CePI673135_04g010440.1 Cec04g1044 200526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1044 645 SUPERFAMILY Voltage-gated potassium channels 64 379 - -
Cec04g1044 645 CDD CAP_ED 457 577 IPR000595 -
Cec04g1044 645 SUPERFAMILY cAMP-binding domain-like 387 578 IPR018490 -
Cec04g1044 645 Gene3D Helix hairpin bin 385 448 - -
Cec04g1044 645 Pfam Ion transport protein 67 384 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1044 645 Gene3D - 71 381 - -
Cec04g1044 645 FunFam Cyclic nucleotide-gated ion channel 1 384 448 - -
Cec04g1044 645 FunFam Cyclic nucleotide-gated ion channel 1 455 574 - -
Cec04g1044 645 PRINTS EAG/ELK/ERG potassium channel family signature 121 130 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec04g1044 645 PRINTS EAG/ELK/ERG potassium channel family signature 233 243 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec04g1044 645 PRINTS EAG/ELK/ERG potassium channel family signature 370 379 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec04g1044 645 PRINTS EAG/ELK/ERG potassium channel family signature 352 363 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec04g1044 645 PRINTS EAG/ELK/ERG potassium channel family signature 420 427 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec04g1044 645 Gene3D Jelly Rolls 455 576 IPR014710 -
Cec04g1044 645 SMART cnmp_10 457 589 IPR000595 -
Cec04g1044 645 ProSiteProfiles cAMP/cGMP binding motif profile. 457 543 IPR000595 -
Cec04g1044 645 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 44 618 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2234 Cec-Chr2:39774418 Cec04g1044 Cec-Chr4:29986672 2.50E-214 dispersed
Cec04g1044 Cec-Chr4:29986672 Cec06g1481 Cec-Chr6:28330910 3.70E-177 dispersed
Cec04g1044 Cec-Chr4:29986672 Cec10g1452 Cec-Chr10:28866671 3.20E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1044 K05391 - csv:101221856 1051.97