Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1047 ATGATTGCGTTTATGGATTCGAAAGAGAAATTGAAAGAGGTGGAGAAATGTTTAGATCCTCAGTTATGGCATGCTTGTGCTGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGGGTTTTCTATTTTCCACAAGGCCATGCGGAGCATTCTTGTGCTCCAGTTGATTTCAGGAACTGTCCTAAGGTTCCTTCATATACCCTATGCAGAGTTTCTGCCATCAAGTTCCTTGCAGATCCTGACACTGATGAAGTGTTTGCTAAACTTAGGTTGATTCCCATAAATGGAAATGAACTAGATTTTGAAGATGATGGAATTGGGAGGCTTAATGGGTCTGAACAAGATAAGCCAACTTCATTTGCAAAGACACTGACTCAATCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCAAGGTATTGTGCAGAAACCATCTTCCCTCGGTTGGATTATTCTGCTGATCCACCTGTGCAGACCATTCTTGCCAAGGATGTTCATGGCGAGACATGGAAATTCAGGCACATTTACCGAGGGACGCCTCGCCGGCATCTTTTGACTACTGGCTGGAGTACTTTTGTTAATCATAAGAAGCTCGTTGCTGGTGATTCCATTGTTTTTTTGAGGGCAGAAAATGGAGATCTCTGCGTTGGGATTAGACGGGCGAAAAGGGGAATCGGGGATGGACCGGAGTCGTCATGTGGATGGAATCCAGCAGGTGGCAACTGTGCTGTCCCATATGGAGCGTTCTCCTCATTTTTGAGGGAAGATGACAACAGATTGAAGAGGTCTGCTAATGGCATGAATGGAAATGGAAGTCTTATGGGAAAGGGGAAGGTGAAGCCTGAATCAGTTATTGAAGCTGCTACACTTGCTGCAAATGGACAACCCTTTGAAATAGTATTCTATCCAAGAGCTAGTACTCCTGAATTCTGCGTCAAGGCAGCACTGGTTAAAGTAGCATTGCAGATCCGGTGGTGCTCAGGTATGAGGTTCAAGATGGCCTTTGAAACCGAGGACTCTTCACGAATTAGCTGGTTCATGGGTACCATCAATTCGGTTCAGGTTTCTGACCCACTGCGCTGGCCTGAGTCACCATGGAGGCTTCTTCAGGTTACATGGGATGAACCAGATTTACTTCAGAATGTGAAACGCGTTAGCCCATGGTTGGTTGAATTGGTATCAAACATGTCTCCAATTCACCTAGCCCCCTTCTCACCACCAAGGAAAAAGCTCAGATATCCACAACACCCTGATTTCCCTCTCGATAACCAACCTCCTGTGCCATCGTTCTCTAGTTATCTCCATGGGACTGGCAGCCCCTTCGGTTGTCCTCCCGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAGATTTTCATCTCAGTAAACTGCAGTCAGGTCTGTTTTCGATTGGTTATCGATCACTGGATCCAGCTGCTGGATCAACTAGACTTTCTGGTAATGCAATGACTGAAAAACCAAGTATGAGTGAAAACGTATCTTGCTTGCTAACCATGGCACATTCTACTCAAGCTTCAAAGAAATTTGACGGCGTAAAGACTCCTCAGCTAATACTTTTTGGCCGACCCATACTTACAGAATTGCAGATGTCCCAAAGCTTCTCCGGCGATACGGTTTCTCCAGTTAATACTGGAAATAGTTCATCAGATGGAAATGGAGACAAAACGGCAAATTTCTCCGATGGCTCTGGATCTGCTTTACATCAACAAGGTCTACTAGAAGGCTCGGCTTGCGAAAATTTCCAATGGTACAAGGACAATCGCCAAGAAATCGAGCCTATCTTGGATACCGGCCACTGTAAAGTCTTTATGGAATCAGAAGATGTAGGTCGCACCCTCGATCTTTCTTCACTTGGGTCTTATGAAGAATTGTACAGAAAACTTGGAAATATGTTTGGTATAGATAATTCAGAGACATTGAATCATGTCTTGTACCGTGATGTTTCCGGTGCTGTCAAGCATGTCGGTGACGAACAATTCAGTGACTTCATCAAGACAGCCAGAAGATTGACAATTCTAACAGATTCAGGAAGTAACAATGTAGGAGCTTAG 2097 45.16 MIAFMDSKEKLKEVEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHSCAPVDFRNCPKVPSYTLCRVSAIKFLADPDTDEVFAKLRLIPINGNELDFEDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPESSCGWNPAGGNCAVPYGAFSSFLREDDNRLKRSANGMNGNGSLMGKGKVKPESVIEAATLAANGQPFEIVFYPRASTPEFCVKAALVKVALQIRWCSGMRFKMAFETEDSSRISWFMGTINSVQVSDPLRWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMSPIHLAPFSPPRKKLRYPQHPDFPLDNQPPVPSFSSYLHGTGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFSIGYRSLDPAAGSTRLSGNAMTEKPSMSENVSCLLTMAHSTQASKKFDGVKTPQLILFGRPILTELQMSQSFSGDTVSPVNTGNSSSDGNGDKTANFSDGSGSALHQQGLLEGSACENFQWYKDNRQEIEPILDTGHCKVFMESEDVGRTLDLSSLGSYEELYRKLGNMFGIDNSETLNHVLYRDVSGAVKHVGDEQFSDFIKTARRLTILTDSGSNNVGA 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30034202 30036621 + CePI673135_04g010470.1 Cec04g1047 200529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1047 698 Gene3D - 118 222 IPR015300 -
Cec04g1047 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 694 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec04g1047 698 Gene3D - 324 398 - -
Cec04g1047 698 MobiDBLite consensus disorder prediction 550 578 - -
Cec04g1047 698 FunFam Auxin response factor 118 222 - -
Cec04g1047 698 SUPERFAMILY DNA-binding pseudobarrel domain 114 225 IPR015300 -
Cec04g1047 698 FunFam Auxin response factor 325 398 - -
Cec04g1047 698 CDD B3_DNA 119 220 IPR003340 GO:0003677(InterPro)
Cec04g1047 698 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677(InterPro)
Cec04g1047 698 Pfam Auxin response factor 287 370 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec04g1047 698 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677(InterPro)
Cec04g1047 698 Gene3D - 611 696 - -
Cec04g1047 698 ProSiteProfiles PB1 domain profile. 612 692 IPR053793 -
Cec04g1047 698 SMART B3_2 120 222 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1047 Cec-Chr4:30034202 Cec08g1114 Cec-Chr8:23045001 7.10E-94 dispersed
Cec02g2231 Cec-Chr2:39724274 Cec04g1047 Cec-Chr4:30034202 4.10E-262 wgd
Cec04g1047 Cec-Chr4:30034202 Cec08g0786 Cec-Chr8:19629432 3.40E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29322 PF02362 B3 1.50E-21 CL0405 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1047 K14486 - csv:101217039 1386.32