Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1051 ATGGCGGAATCCGGTCACCAAAATGGCTTCGAGTTTTGCATCGGCGGCCGGAACAATATCAACCACGATCCGTTGAATTGGGGAGTGGCAGCGGAGTCGTTGAAGGGAAGCCATTTGGAAGAAGTGAAGCGGATGGTGGAAGAATACCGGCGGCAGGTGGTGAAGCTGGGAGGAGAGACGCTGACGATATCTCAGGTGGCAGCGATCGCCGCCAAGGATTCCGGCGTGGCGGTTGAGCTGTCGGAGTCGGCGAGAGGCGGCGTTGAGGCCAGCAGTAAATGGGTGATGGACAGCATGAATCAAGGGACTGATAGCTACGGCGTCACCACCGGCTTCGGCGCCACCTCCCACCGCCGGACTAAAGAAGGTGGCGCTCTGCAGAGGGAGCTCATACGATTTTTGAATTCGGGAATATTTGGAAATGGCATTGAATCAAGTCACATTTTGCCTCACTCAGCAACGAGAGCAGCCATGTTGGTTAGAATTAACACTCTCCTTCAAGGCTACTCGGGCATTAGGTTTGAAATTTTGGAAGCCATAACCAAACTTCTCAACCACAACATCACCCCATGTTTGCCACTTCGAGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTTACTGGCCGACCAAACTCTAAAGCTATTGGTCCAAATGGAGAAAGTCTTGATGCGAAGGGGGCTTTCAAACAAGCTGGTATTTCGTCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGGTTGGCTCTTGTCAATGGGACTGCTGTTGGTTCGGGGTTAGCATCTATTGTTCTTTTTGAGGCAAACATTTTGGCAGTTTTAGCTGAGATTTTGTCTGCTATTTTTGCTGAGGTTATGCAAGGAAAGCCTGAATTTACAGATCATTTGACACACAAGTTAAAGCACCATCCTGGTCAGATTGAGGCAGCTGCAATCATGGAACATATTCTGGATGGAAGTTCTTACGTTAAAGAAGCTAAAAAATTGCATGAAATTGATCCTCTTCAGAAGCCAAAACAAGATCGCTACGCTCTTAGAACGTCACCTCAATGGCTTGGTCCATTGATTGAGGTCATTAGATTTTCTACCAAGTCAATTGAGCGAGAGATTAATTCAGTTAATGATAATCCTTTGATTGACGTTTCAAGGAACAAGGCTTTACATGGAGGTAACTTCCAGGGAACGCCAATCGGTGTCTCGATGGACAACACTCGCCTGGCTATAGCTTCGATTGGTAAGCTCATTTTCGCTCAATTTTCTGAGCTTGTTAATGATTTCTACAACAATGGTTTACCTTCAAATCTCTCTGCCAGTAGAAACCCAAGTTTAGATTATGGATTCAAAGGTACCGAAATTGCTATGGCTTCCTATTGCTCTGAGCTTCAATATTTAGCCAACCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTTAACTCTCTTGGTTTAATCTCCTCGAGAAAAACAGAAGAAGCCATTGACATTTTGAAACTCATGTCTTCAACATTTTTAGTTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAAAATTTAAAGAGCACAGTGAAAAACACAATAAGCCAAGTGGCCAAGAAGGTCCTTACCACCGACGCTAATGGAGCTCTCCACCCATCAAGATTTTGTGAGAAGGATTTACTCAAAATTGTTGATAGAGAATACACCTTTGCTTACATTGATGACCCATGCAGTGCCACTTATCCGTTAATGCAGAAGTTAAGACAAGTTCTTGTAGAGCATGCACTTGCAAATGGAGAAGATGAGAAGAACCCAAATAGTTCAATCTTTCAAAAGATTGGTGTTTTTGAAGAGGAACTAAAAGTTGTTTTGCCTAAGGAGGTAGAAAGTGCAAGGTTTGCTTATGAAAATGGGAACTTTACCATTCAAAATCAAATTAAGAAATGTCGGTCATATCCACTCTACAAGTTTGTGAGAACTGAGTTAGGAACTGAGTTACTTACAGGAGAGAAGGTAAAATCTCCTGGAGAAGTGTGCGAGAAAGTGTTTATCGCTTTATGTCAAGGAAAGATGATTGACCCAATTTTAGAGTGTTTAAAAGAGTGGAATGGTGCTCCAATCCCTATTTGCTAA 2145 43.64 MAESGHQNGFEFCIGGRNNINHDPLNWGVAAESLKGSHLEEVKRMVEEYRRQVVKLGGETLTISQVAAIAAKDSGVAVELSESARGGVEASSKWVMDSMNQGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNSGIFGNGIESSHILPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESLDAKGAFKQAGISSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTEEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTISQVAKKVLTTDANGALHPSRFCEKDLLKIVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALANGEDEKNPNSSIFQKIGVFEEELKVVLPKEVESARFAYENGNFTIQNQIKKCRSYPLYKFVRTELGTELLTGEKVKSPGEVCEKVFIALCQGKMIDPILECLKEWNGAPIPIC 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30082408 30085467 + CePI673135_04g010510.1 Cec04g1051 200533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1051 714 Gene3D - 527 648 IPR023144 -
Cec04g1051 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Cec04g1051 714 Coils Coil 39 59 - -
Cec04g1051 714 NCBIfam phenylalanine ammonia-lyase 23 704 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cec04g1051 714 PANTHER HISTIDINE AMMONIA-LYASE 20 714 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cec04g1051 714 Pfam Aromatic amino acid lyase 61 539 IPR001106 -
Cec04g1051 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824(InterPro)
Cec04g1051 714 FunFam Phenylalanine ammonia-lyase 16 260 - -
Cec04g1051 714 FunFam Phenylalanine ammonia-lyase 261 568 - -
Cec04g1051 714 FunFam Phenylalanine ammonia-lyase 527 648 - -
Cec04g1051 714 CDD PAL-HAL 59 524 IPR001106 -
Cec04g1051 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841(InterPro)
Cec04g1051 714 Gene3D - 14 260 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1051 Cec-Chr4:30082408 Cec04g1053 Cec-Chr4:30098872 0.00E+00 dispersed
Cec04g1051 Cec-Chr4:30082408 Cec04g1052 Cec-Chr4:30091772 0.00E+00 tandem
Cec03g1588 Cec-Chr3:33988810 Cec04g1051 Cec-Chr4:30082408 1.10E-235 transposed
Cec02g2238 Cec-Chr2:39830901 Cec04g1051 Cec-Chr4:30082408 0.00E+00 wgd
Cec04g1051 Cec-Chr4:30082408 Cec08g0790 Cec-Chr8:19735758 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1051 K10775 - csv:101217907 1340.48