Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1052 ATGGCACCCGTTGATCAAACCAATGATAGCTTTTGCACCATTACTACTCATCCTGACCCACTCAATTGGGGTTTGGCTGCTGATTCCCTTAAGGGAAGCCATCTTGATGAGGTGAAGCGCATGGTAGAGGAGTACCGAAGGCCCCTCGTCAAGCTTGGTGGTGAAACCCTCACTATTTCCCAAGTGGCTGCCATTGCTACTCGAGACTCTGATGTTATTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAGGCCAGCAGTGATTGGGTTATGGAGAGTATGAATAAAGGGACTGATAGTTATGGTGTAACTACTGGATTTGGTGCTACATCTCATAGAAGGACCAAACAAGGTGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAATGCTGGAATTTTTGGAAGTGGAGCTGAATCTGATCATACTTTGCCTCATTCGGCTACGAGGGCGGCTATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCGATTACCCAACTTTTGAACCATAATATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGGCCGAATTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCCAAAAGGCTGGAATTCCATCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGGTTGGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTTTGTCTGAGATTTTGTCTGCCATATTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACTGACCATTTGACCCATAAGCTAAAGCATCATCCTGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAATGGTTAGGTCCATTGATTGAAGTGATTCGGTTCTCAACAAAATCGATTGAGCGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTCTGGCTATTGCTTCAATTGGAAAACTCATTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAATAATGGATTACCCTCAAATCTTTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATCGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCGAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTCGGTTTGATCTCTTCAAGAAAAACAGCTGAGGCTATTGACATTTTGAAGCTCATGTCATCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGACATTTGGAAGAAAACCTGAAGAATGTAGTGAAGAACACAGTAAGTCAAGTGGCTAAAAAAGTTCTCACCACCGGTGTTAATGGTGCACTTCACCCATCAAGATTTTGTGAAAAAGATTTATTGAAAGTGGTCGACAGAGAATACACCTTTGCCTACGTCGATGATGCGTGCAGTGCGACTTACCCATTGATGCAAAAACTAAGACAAGTTCTTGTTGAACATGCTCTGGGAAATGGTGAAGATGAAAAGAACGTAAACACTTCAGTTTTTCAAAAGATTGGAGTTTTTGAGGAGGAATTGAAAGCCATCTTGCCGAAAGAAGTAGAAAATGCAAGACTCTCCTATGAAAATGGAACGTCCACCATTGAAAACCAAATTAAAGAATGCAGATCTTATCCACTATACAAGTTTGTGAGGGAGGAGTTGGGAACTGGGTTGTTGACTGGAGAGAGGGTGGTATCTCCAGGAGAAGAGTGTGAAAAAGTATTCACAGCTCTTTGCCAAGGAAAGATGATTGATCCAATTTTAGAGTGTTTGAAGGAGTGGAATGGTGCTCCAATCCCCATTTGCTAG 2133 42.94 MAPVDQTNDSFCTITTHPDPLNWGLAADSLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVIVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITQLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQKAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNVVKNTVSQVAKKVLTTGVNGALHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALGNGEDEKNVNTSVFQKIGVFEEELKAILPKEVENARLSYENGTSTIENQIKECRSYPLYKFVREELGTGLLTGERVVSPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30091772 30093904 + CePI673135_04g010520.1 Cec04g1052 200534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1052 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
Cec04g1052 710 Gene3D - 11 256 IPR024083 -
Cec04g1052 710 FunFam Phenylalanine ammonia-lyase 523 644 - -
Cec04g1052 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841(InterPro)
Cec04g1052 710 NCBIfam phenylalanine ammonia-lyase 19 700 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cec04g1052 710 Gene3D - 523 644 IPR023144 -
Cec04g1052 710 FunFam Phenylalanine ammonia-lyase 11 256 - -
Cec04g1052 710 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824(InterPro)
Cec04g1052 710 PANTHER HISTIDINE AMMONIA-LYASE 17 710 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cec04g1052 710 FunFam Phenylalanine ammonia-lyase 257 560 - -
Cec04g1052 710 Pfam Aromatic amino acid lyase 57 535 IPR001106 -
Cec04g1052 710 CDD PAL-HAL 55 520 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2238 Cec-Chr2:39830901 Cec04g1052 Cec-Chr4:30091772 0.00E+00 dispersed
Cec04g1052 Cec-Chr4:30091772 Cec04g1054 Cec-Chr4:30103131 0.00E+00 dispersed
Cec04g1051 Cec-Chr4:30082408 Cec04g1052 Cec-Chr4:30091772 0.00E+00 tandem
Cec04g1052 Cec-Chr4:30091772 Cec04g1053 Cec-Chr4:30098872 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1052 K10775 - csv:101218144 1370.91