Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1053 ATGGCATCTTTTCAAAAGATTGAAGACAACTTGTGCCATGGCCATAGTGATCCACTCAATTGGGGTTTGGCTGCTGATTCCCTTAAGGGAAGCCATCTTGATGAGGTGAAGCGCATGGTAGAGGAGTACCAAAGGCCCCTCGTCAAGCTTGGTGGTGAAACCCTCACTATTTCCCAAGTGGCTGCCATTGCTACTCGAGACTCTGATGTTATTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAGGCCAGCAGTGATTGGGTTATGGAGAGTATGAATAAAGGGACTGATAGTTATGGTGTAACTACTGGATTTGGTGCTACATCTCATAGAAGGACCAAACAAGGTGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAATGCTGGAATTTTTGGAAGTGGAGCTGAATCTGATCATACTTTGCCTCATTCGGCTACGAGGGCGGCTATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCGATTACACAACTTTTGAACCATAATATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGGCCGAATTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCCAAAAGGCTGGAATTCCATATGGGTTCTTTGAGTTGCAGCCTAAGGAAGGGTTGGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTTTGTCTGAGATTTTGTCTGCCATATTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACTGACCATTTGACCCATAAGCTAAAGCATCATCCTGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAATGGTTAGGTCCATTGATTGAAGTGATTCGGTTCTCAACAAAATCGATTGAGCGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTCTGGCTATTGCTTCAATTGGAAAACTCATTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAATAATGGATTACCCTCAAATCTTTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATCGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCGAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTCGGTTTGATCTCTTCAAGAAAAACAGCTGAGGCTATTGACATTTTGAAGCTCATGTCATCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCACCTAGAAGAGAACTTGAAGAACACAGTTAAAAATATAGTGAGCCAAGTGGCGAAGAAAGTCCTCACAACTAGCTCAAATGGCACACTTCATCCTTCAAGATTTTGCGAGAAAGATTTACTCAAAGTGGTTGATAGAGAATACACTTTTGCTTATATTGACGATCCATGTAGTGCTACTTATCCATTGATGCAAAAGTTAAGACAAGTTATCGTCGAGCATGCTTTGAATAATGGAGAGGACGAAAAAGACCTAAGTACTTCAATCTTTCAAAAAATTGGAACCTTTGAAGAGGAATTGAAGGCCATTTTGCCTAAAGAAGTCGAAAGTGTCAGATTGGCATATGAAAATGGAGATGCAACCATTGAGAACCAAATTAAGGAATGCAGATCTTACCCATTATACAAGTTTGTGAGGGAAGAGTTGGGCACTAACTTGTTAACCGGGGAGAAAGTTATATCTCCAGGAGAAGAGTGCGAAAAGGTTTTTATTGCATTGTGTCAAGGAAAGATGATTGACCCTATTTTAGAATGCTTGAAGGAATGGAATGGGGCTCCAATTCCCATATGTTAA 2127 42.08 MASFQKIEDNLCHGHSDPLNWGLAADSLKGSHLDEVKRMVEEYQRPLVKLGGETLTISQVAAIATRDSDVIVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITQLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQKAGIPYGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNIVSQVAKKVLTTSSNGTLHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVIVEHALNNGEDEKDLSTSIFQKIGTFEEELKAILPKEVESVRLAYENGDATIENQIKECRSYPLYKFVREELGTNLLTGEKVISPGEECEKVFIALCQGKMIDPILECLKEWNGAPIPIC 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30098872 30100998 + CePI673135_04g010530.1 Cec04g1053 200535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1053 708 SUPERFAMILY L-aspartase-like 17 708 IPR008948 GO:0003824(InterPro)
Cec04g1053 708 CDD PAL-HAL 53 518 IPR001106 -
Cec04g1053 708 Gene3D - 9 254 IPR024083 -
Cec04g1053 708 FunFam Phenylalanine ammonia-lyase 8 254 - -
Cec04g1053 708 FunFam Phenylalanine ammonia-lyase 521 642 - -
Cec04g1053 708 Gene3D Fumarase/aspartase (Central domain) 255 703 - -
Cec04g1053 708 NCBIfam phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cec04g1053 708 Gene3D - 521 642 IPR023144 -
Cec04g1053 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841(InterPro)
Cec04g1053 708 Pfam Aromatic amino acid lyase 55 535 IPR001106 -
Cec04g1053 708 PANTHER HISTIDINE AMMONIA-LYASE 14 708 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cec04g1053 708 FunFam Phenylalanine ammonia-lyase 255 564 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1588 Cec-Chr3:33988810 Cec04g1053 Cec-Chr4:30098872 7.00E-238 dispersed
Cec04g1051 Cec-Chr4:30082408 Cec04g1053 Cec-Chr4:30098872 0.00E+00 dispersed
Cec04g1053 Cec-Chr4:30098872 Cec07g1305 Cec-Chr7:28583221 0.00E+00 dispersed
Cec04g1052 Cec-Chr4:30091772 Cec04g1053 Cec-Chr4:30098872 0.00E+00 tandem
Cec04g1053 Cec-Chr4:30098872 Cec04g1054 Cec-Chr4:30103131 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1053 K10775 - csv:101218382 1353.96