Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1054 ATGGCACCAACTCAATTCCAGCAACAGAATGGTTCAATGGAGAGCTTGTGCACTAGCCAAAACGATCCACTCAACTGGGGTGTGGCCGCCGAGTCCCTCAAGGGAAGCCATCTCGATGAGTTGAAGCGCATGGTTGAAGAGTACCGGAGGCCCCTTGTCAAGCTTGGTGGTGAAACCCTCACTATTTCCCAAGTAGCTGCTATTGCTACTCGAGACTTTGATGTTACGGTTGAACTTTCTGAGTCTGCTAGAGTTGGTGTTAAAGCTAGCAGTGATTGGGTTATGGAGAGTATGAACAAAGGGACTGATAGTTATGGTGTTACTACTGGGTTTGGTGCTACGTCTCATAGAAGGACCAAACAAGGAGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAACGCTGGGATTTTTGGAAATGGAGCTGAGTCTGATCACACTTTGCCCCACTCAGCGACAAGGGCAGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCAGGTATTAGATTTGAGATTTTAGAAGCTATAACCAAACTTTTGAACCATAACATTACTCCATGCTTGCCTCTTCGTGGAACAATTACTGCTTCTGGAGATCTTGTTCCACTTTCTTATATTGCTGGATTGCTCACTGGACGACCTAACTCCAAGGCGATTGGACCCAACGGAGAACATATTGACGCCAAGGAGGCTTTCCAACAAGCTGGTATTCCTTCTGAGTTCTTCGAATTGCAGCCTAAGGAAGGCCTTGCTCTTGTTAATGGTACTGCTGTCGGATCAGGATTGGCTTCTATTGTCCTCTTCGAGGCAAATATTTTGGCTGTTCTGGCGGAAATTCTTTCTGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCAGAATTTACTGATCATTTGACTCATAAGTTGAAGCACCATCCTGGTCAAATTGAAGCAGCTGCAATTATGGAGCACATTTTGGATGGAAGCTCTTACATGAAAGCAGTCAAGAAATTGCATGAAATTGATCCCCTCCAAAAGCCCAAACAAGATCGCTATGCTCTAAGAACTTCACCTCAATGGCTTGGTCCCTTGATTGAAGTGATTCGATTCTCTACAAAATCTATTGAGCGAGAGATTAACTCCGTCAATGACAACCCTTTGATTGACGTTTCAAGAAACAAAGCACTACATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGACAACACTCGATTGGCCATTGCTTCGATTGGGAAGCTCATGTTTGCCCAATTCTCAGAACTTGTTAATGATTTCTACAACAACGGTTTGCCATCTAATCTTTCTGCAAGTAGAAATCCGAGTTTGGATTATGGGTTTAAAGGAGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATACCTTGCAAATCCAGTGACAAGCCATGTTCAAAGCGCCGAGCAACACAACCAAGATGTTAACTCTCTAGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCCATTGATATTCTGAAACTCATGTCATCTACATTTTTGGTTGCTCTCTGCCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACTGTGAAGAGCACTGTTAGCCAAATAGCCAAGAAAGTATTGACCACATCCTCTAATGGCGCATTTCACCCCTCAAGATTTTGTGAGAAAGATCTACTCAAAGTCGTTGATAGAGAGTACACATTTGCTTATATCGACGATCCATGTAGTGCTACTTACCCATTGAGCCAAAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGCAAACGGTGATGATGAAAAGAACCCAAACACTTCAATCTTCCAAAAGATTGTTTCTTTCGAGGAGGAACTAAAGGCAATATTACCCAAGGAAGTTGAAAATGCAAGGTTGGCCTATGAGAGTGGAAATTCTAAAATTGAAAATCAAATCAAGAATTGTAGATCATATCCGTTGTATAGATTTGTAAGAGAAGAGTTGGAAACAAAAATGCTAACGGGAGAAAGAGTGATATCTCCGGGAGAAGAGTGTGAGAAAGTATTCACAGCTTTGTGTCAAGGCAAGATGATAGACTCAATCTTAGAGTGCTTGAAGGAGTGGAATGGTGCTCCAATTCCTATTTGCTAA 2142 42.58 MAPTQFQQQNGSMESLCTSQNDPLNWGVAAESLKGSHLDELKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVELSESARVGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGEHIDAKEAFQQAGIPSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAVKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSQIAKKVLTTSSNGAFHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLSQKLRQVLVEHALANGDDEKNPNTSIFQKIVSFEEELKAILPKEVENARLAYESGNSKIENQIKNCRSYPLYRFVREELETKMLTGERVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30103131 30105272 - CePI673135_04g010540.1 Cec04g1054 200536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1054 713 Pfam Aromatic amino acid lyase 60 536 IPR001106 -
Cec04g1054 713 CDD PAL-HAL 58 523 IPR001106 -
Cec04g1054 713 FunFam Phenylalanine ammonia-lyase 13 259 - -
Cec04g1054 713 PANTHER HISTIDINE AMMONIA-LYASE 18 713 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cec04g1054 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Cec04g1054 713 Gene3D - 526 647 IPR023144 -
Cec04g1054 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824(InterPro)
Cec04g1054 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Cec04g1054 713 FunFam Phenylalanine ammonia-lyase 260 556 - -
Cec04g1054 713 NCBIfam phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cec04g1054 713 Gene3D - 14 259 IPR024083 -
Cec04g1054 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1052 Cec-Chr4:30091772 Cec04g1054 Cec-Chr4:30103131 0.00E+00 dispersed
Cec04g1054 Cec-Chr4:30103131 Cec07g1305 Cec-Chr7:28583221 0.00E+00 dispersed
Cec04g1053 Cec-Chr4:30098872 Cec04g1054 Cec-Chr4:30103131 0.00E+00 tandem
Cec04g1054 Cec-Chr4:30103131 Cec04g1055 Cec-Chr4:30108094 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1054 K10775 - csv:101218617 1337.4