Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1055 ATGGCGCCTGCCCAATTGGAACAATGTGCTCACCATAATGGCTCAATGGAGAGCTTTTGCACAAGCCATGTTGATCCACTCAATTGGGGTGTGGCAGCTGATGCTCTCAAGGGAAGTCATCTTGATGAGGTGAAGAGGATGGTGGAAGAGTATAGACGGCCAGTGGTGAAGCTTGGGGGTGAGACTCTTACTATTTCTCAAGTGGCTGCTATTGCCACTCGCGATAATGATGTGGTTGTGGAATTGGCTGAGTCTGCTAGAGCGGGTGTTAAAGCTAGTAATGATTGGGTGATGGAGAGTATGAGTAAAGGGACTGATAGTTATGGTGTTACTACTGGATTTGGTGCTACGTCTCATAGAAGGACCAAACAAGGTGGGGCTCTTCAGAAGGAGTTGATTCGGTTTTTGAATGCTGGAATTTTTGGAAATGGGGCTGAGTCGAATCATACTTTGCCTCATTCGGCGACGAGGGCAGCCATGTTGGTGAGGATCAATACTCTGCTTCAAGGCTATTCGGGTATTCGATTTGAGATTTTGGAAGCTATTGCTAATCTTCTCAATCAAAACATTACTCCATGTTTGCCACTGCGAGGAACAATTACAGCATCTGGGGATCTTGTCCCTTTGTCGTATATTGCTGGGCTACTTACCGGTCGTCATAATTCCAAAGCGATTGGGCCTAATGGGGAAACTCTTGACGCAGAGACTGCCTTTAAAAAAGCTAGCATTCCCTCTGGCTTCTTCGAGTTGCAACCTAAAGAAGGCCTTGCTCTTGTCAATGGGACTGCTGTTGGTTCTGGATTGGCTTCTATTGTCCTATTTGAGGCAAATATATTAGCTGTTTTGTCAGAAATTCTTTCTGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCTGAATTCACCGATCATTTGACTCACAAGTTGAAACATCATCCTGGTCAGATTGAAGCAGCTGCAATCATAGAGCACATTTTCGATGGAAGTTCTTACATGAAAACAGCCAAGAAACTACATGAAATTGATCCCCTCCAAAAGCCCAAACAAGATCGTTATGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGGTTCTCAACAAAGTCTATTGAACGAGAGATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCATTGCATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGACAACACACGGTTGGCCATTGCTTCAATTGGGAAGCTCATGTTTGCCCAATTCTCTGAACTTGTCAATGATTTTTACAACAATGGCTTGCCTTCTAACCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGGTTTAAAGGAGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATACCTTGCAAATCCGGTGACAAGTCATGTCCAAAGTGCTGAACAACATAACCAAGATGTTAATTCTCTTGGTTTAATTTCTTCAAGAAAAACAACTGAAGCCATTGATATCTTGAAACTCATGTCGTCAACATTTTTAGTTGCACTCTGCCAAGCAATTGACTTGAGGCACTTGGAGGAAAACTTGAAGAGCACAGTTAAAAGCATAGTGAGCCAAGTAGCCAAGAAGATGTTGACGACATCCTCCAATGGTGCACTACACCCATCAAGATTTTGTGAGAAAGATCTACTTAAAGTCGTTGATAGAGAATACACATTTGCATACATTGATGATCCATGCAGCGCTACTTATCCGTTGATGCAAAAATTGAGACAAGTACTGGTTGAACATGCACTCACCAATGGCGAAAATGAAAAGGACACAAACACTTCCATCTTCCAGAAGATTACTACTTTTGAAGAGGAATTAAAGGCAATTTTACCAAAGGAAATTGAAAACGCAAGGTTGGCATATGAGAGTGGAAATTCTAAAATTGCAAATCAAATTAAGGATTGCAGATCCTATCCATTATATAGATTTGTGAGAGAAGACTTGGGAACAAAACTTTTGAATGGAGAAAGGGTTATATCTCCCGAAGAAGAATGCGAGAAGGTATTTACAGCTTTGTGTCAAGGAAAGATGATTGACTCTATCTTAGAGTGCTTAAAAGAGTGGAATGGTGCTCCCGTTCCTATCCGTTGA 2151 42.03 MAPAQLEQCAHHNGSMESFCTSHVDPLNWGVAADALKGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIATRDNDVVVELAESARAGVKASNDWVMESMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNQNITPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGETLDAETAFKKASIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIIEHIFDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTTEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSIVSQVAKKMLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALTNGENEKDTNTSIFQKITTFEEELKAILPKEIENARLAYESGNSKIANQIKDCRSYPLYRFVREDLGTKLLNGERVISPEEECEKVFTALCQGKMIDSILECLKEWNGAPVPIR 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30108094 30110244 - CePI673135_04g010550.1 Cec04g1055 200537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1055 716 SUPERFAMILY L-aspartase-like 25 715 IPR008948 GO:0003824(InterPro)
Cec04g1055 716 Gene3D - 17 262 IPR024083 -
Cec04g1055 716 NCBIfam phenylalanine ammonia-lyase 25 706 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cec04g1055 716 CDD PAL-HAL 61 526 IPR001106 -
Cec04g1055 716 Gene3D - 529 650 IPR023144 -
Cec04g1055 716 FunFam Phenylalanine ammonia-lyase 263 572 - -
Cec04g1055 716 FunFam Phenylalanine ammonia-lyase 529 650 - -
Cec04g1055 716 Pfam Aromatic amino acid lyase 63 542 IPR001106 -
Cec04g1055 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841(InterPro)
Cec04g1055 716 FunFam Phenylalanine ammonia-lyase 16 262 - -
Cec04g1055 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Cec04g1055 716 PANTHER HISTIDINE AMMONIA-LYASE 22 715 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1055 Cec-Chr4:30108094 Cec07g1305 Cec-Chr7:28583221 0.00E+00 dispersed
Cec04g1054 Cec-Chr4:30103131 Cec04g1055 Cec-Chr4:30108094 0.00E+00 tandem
Cec04g1055 Cec-Chr4:30108094 Cec04g1056 Cec-Chr4:30112531 9.70E-54 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1055 K10775 - csv:101222092 1340.48