Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1082 ATGCTGGCCACAACCTGCATTGTGCTGCTAGCTTTGCTGCTACCCTCTAGCTTGCCGCTCCGTGCCGGTGCTGGTACCCCCGCCGCCGCTCTCAACCTCACTCTCCCCGGCCAGCATCCAAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTAAATGCTTCCTTAACGAGAAGGCAATTGCTCCAAATCTCAGAGAAGGATGATTCTTCTTCTTGCTACACCGGGAACCCCATCGACGACTGCTGGAAATGCGATCCAAATTGGCCAAACAACCGCCAGCGCCTCGCCGATTGCGCCATAGGATTCGGCCAGTACGCTCTCGGCGGCAAAAATGGCGAGTTCTACATAGTCACAGACGATTCGGACGACGATGCGGTAAATCCAAAGCCCGGAACATTACGATACGCCGTGATACAGCCGCAACCTCTCTGGATCGTCTTCCCCGCCAACATGCTCATCAAACTCAAACAGGAACTCATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAATGTCCATATAGTCGGCGGTGGCTGCATTACATTGCAGTACATAAGCAATGTCATCATCCACAACATCCATATCCACCATTGTTATCCATCAGGTAACACCATGGTCCGATCAAGTCCGACGCATTACGGGTACCGGACGAAATCGGACGGCGACGGGATATCGATCTTCGGATCGAAGGATATATGGATTGATCATTGTTCATTGTCGCATTGCAAAGATGGGCTGATCGATGCGGTGATGGGCTCCACCGGAATCACGATTTCAAACAATTATTTCTCACATCACGATGAAGTTATGCTGTTGGGTCACAGCGATCACTACTCGCCGGATTCCGGAATGCAGGTTACAATAGCATTCAACCACTTCGGAGAGAAGCTAGTGCAAAGGATGCCACGATGCCGATTAGGTTACATTCACGTCGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGTGGAAACCCCACCATCAACAGCCAAGGCAACCGCTACACCGCCCCTTACGACCGCAACGCCAAGGAAGTAACCAAGCGAGTCGAAACTTCCGAGTCCGAGTGGCGCGGCTGGAACTGGCGCTCCGAGGGCGATATCCTCGTAAACGGCGCTTTCTTCGTCACTTCCGGCCAAGGCCTTGAAGTAAAGTACGAGAAGGCTTACAGTGTCGAACCTAAGTCCGCCGCCCTAATTGACCAACTCACTTGGCACGCCGGCCCGCTCGGCGTCGGCGGTAGGGACAATAATTTGGGAATGTGGACTACTGGCCCTAATGGCGGAGGCTTTGCGCTTGGGTCTGGGATGGATTACACTGACGACATGTCAGAAAGTTATTTTGTTAGGGTTTTTTCTCTTTTGTTGTGCTCTTTTTGCGCATTGGTGCTTGCCTTTGTGCTATGA 1431 52.41 MLATTCIVLLALLLPSSLPLRAGAGTPAAALNLTLPGQHPSPELVAQEVHRKVNASLTRRQLLQISEKDDSSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKPGTLRYAVIQPQPLWIVFPANMLIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDHYSPDSGMQVTIAFNHFGEKLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSEGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGGGFALGSGMDYTDDMSESYFVRVFSLLLCSFCALVLAFVL 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30350018 30353384 + CePI673135_04g010820.1 Cec04g1082 200564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1082 476 PANTHER PECTATE LYASE 18-RELATED 24 420 IPR045032 GO:0030570(InterPro)
Cec04g1082 476 Pfam Pectate lyase 158 341 IPR002022 -
Cec04g1082 476 Gene3D - 77 419 IPR012334 -
Cec04g1082 476 PRINTS Pollen allergen Amb family signature 397 420 IPR018082 -
Cec04g1082 476 PRINTS Pollen allergen Amb family signature 124 149 IPR018082 -
Cec04g1082 476 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Cec04g1082 476 PRINTS Pollen allergen Amb family signature 368 392 IPR018082 -
Cec04g1082 476 PRINTS Pollen allergen Amb family signature 160 176 IPR018082 -
Cec04g1082 476 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Cec04g1082 476 PRINTS Pollen allergen Amb family signature 224 245 IPR018082 -
Cec04g1082 476 PRINTS Pollen allergen Amb family signature 100 117 IPR018082 -
Cec04g1082 476 FunFam Pectate lyase 77 419 - -
Cec04g1082 476 SUPERFAMILY Pectin lyase-like 73 402 IPR011050 -
Cec04g1082 476 SMART amb_all 152 349 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1082 Cec-Chr4:30350018 Cec05g2352 Cec-Chr5:34761519 9.00E-181 dispersed
Cec04g1082 Cec-Chr4:30350018 Cec08g0815 Cec-Chr8:19998474 9.90E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1082 K01728 - csv:101203012 922.924