Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1088 ATGCCGATCCGTAACATTGCAATTGGAAGGCCCGAAGAGGCTACTCATCCAGATGCTTTGAAGGCTGGGTTGGCTGAGTTCATTTCCACCTTGATCTTTGTTTTTGCTGGCCAAGGTTCCGGCATAGCCTTCAGTAAGCTTACCGAAGGCGGCGCCACCACTCCCGCCGGTCTCATCTCCGCCTCCATCGCCCACGCCTTTGCCCTTTTTGTTGCCGTCTCCGTTGGCGCTAACATCTCTGGTGGCCATGTCAACCCCGCCGTTACCTTCGGTGCTTTCGTCGGTGGTAACATCACCCTCCTACGTGGCATCATCTACTGGATTGCTCAACTCCTTGGATCCGTTGTCGCTTGCTTGCTCCTTAAATTCGTCACCGGCTTGCCCACCGGAAGCTTCGCTCTGTCAGCTGGAGTTGGAGAAATTAACGCCTTCGTTTTCGAGATCGTAATGACCTTCGGATTGGTGTACACAGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACTATTGCACCCATCGCAATCGGTTTCATCGTCGGAGCTAACATTTTGGCCGGCGGAGCATTCACCGGAGCATCCATGAACCCGGCCGTGGCCTTCGGCCCATCAGTAGTGAGCTGGTCATGGAGCAACCACTGGGTCTACTGGGCCGGGCCTCTGATCGGAGGTGGGCTCGCTGGTCTCATCTACGAGTTCATCTTCATTTCCAACACCCACGAGCAGCTCCCAACCACCGACTACTAA 753 55.38 MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTEGGATTPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGEINAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWSNHWVYWAGPLIGGGLAGLIYEFIFISNTHEQLPTTDY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30392241 30393477 - CePI673135_04g010880.1 Cec04g1088 200570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1088 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Cec04g1088 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1088 250 CDD MIP 21 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1088 250 FunFam Probable aquaporin TIP1-1 4 250 - -
Cec04g1088 250 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Cec04g1088 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cec04g1088 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1088 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1088 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1088 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1088 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1088 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g1088 250 PANTHER AQUAPORIN-8 5 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1088 Cec-Chr4:30392241 Cec05g2318 Cec-Chr5:34482005 1.40E-28 dispersed
Cec01g0414 Cec-Chr1:4361771 Cec04g1088 Cec-Chr4:30392241 1.00E-79 transposed
Cec01g0497 Cec-Chr1:5064271 Cec04g1088 Cec-Chr4:30392241 6.70E-45 transposed
Cec01g1559 Cec-Chr1:30162758 Cec04g1088 Cec-Chr4:30392241 6.30E-81 transposed
Cec08g1264 Cec-Chr8:24605311 Cec04g1088 Cec-Chr4:30392241 5.50E-65 transposed
Cec09g0187 Cec-Chr9:1663622 Cec04g1088 Cec-Chr4:30392241 4.80E-77 transposed
Cec09g2117 Cec-Chr9:38161239 Cec04g1088 Cec-Chr4:30392241 2.80E-96 transposed
Cec10g2002 Cec-Chr10:34803829 Cec04g1088 Cec-Chr4:30392241 4.40E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1088 K09873 - csv:101204225 465.692