Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1119 ATGGAGTGGAATAATGGCAAAACTTTCACTCCTAACTTCGTTTCTCCACCACCACATTCTTCTTCCTCTGCTTTGCTCTACAACTGCAACAACTACAACTGCAATTTCGATCACTTTCCTGTTCAATTAGTGATGGAGACGACGACGACGAAGAAAGTGGCAGTGGAAGGTGAACAAAGTGTGGTTGGAGGAGTGGATCAAAAGAAGAAGAGATTGAGTGAGGATCAGTTGGAGGCATTAGAGAGAAGCTTTCAAGAGGAAGTGAAGCTTGATCCTGATAGAAAAATGAAGCTATCAAACGAACTTGGGCTCCAACCAAGACAAATAGCTGTGTGGTTTCAAAATAGAAGAGCTCGCTGGAAAACTAAGCAGCTTGAGCATCTCTATGATACTCTCAAACAACAATTTGATACTATCTCTAAGGAAAAGCATAACCTTCAACAAGAGGTGATAAAACTAAGAAGCATGCTAAGAGAACAAGCAACGAGGAATCAAGGGTCGATAGGTTACACGGATGTCTCCGGGGAAGAGACGACGGTGGAATGCACGTCGGTTGAGATTCTGAGCTGTAACAATTACATCTACAATAATGTGGAAGATTTCAACCAAATATCAGCTTCAGCTCCTCCATTCTGGTGGGGTGCTGAGGCTACTCACCTGCCTTCTTATCCTTAG 675 43.11 MEWNNGKTFTPNFVSPPPHSSSSALLYNCNNYNCNFDHFPVQLVMETTTTKKVAVEGEQSVVGGVDQKKKRLSEDQLEALERSFQEEVKLDPDRKMKLSNELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVIKLRSMLREQATRNQGSIGYTDVSGEETTVECTSVEILSCNNYIYNNVEDFNQISASAPPFWWGAEATHLPSYP 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30730177 30732501 - CePI673135_04g011190.1 Cec04g1119 200601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1119 224 Pfam Homeobox associated leucine zipper 123 157 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1119 224 Pfam Homeodomain 68 121 IPR001356 GO:0003677(InterPro)
Cec04g1119 224 SUPERFAMILY Homeodomain-like 62 125 IPR009057 -
Cec04g1119 224 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec04g1119 224 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677(InterPro)
Cec04g1119 224 SMART HOX_1 66 127 IPR001356 GO:0003677(InterPro)
Cec04g1119 224 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 59 166 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cec04g1119 224 CDD homeodomain 67 124 IPR001356 GO:0003677(InterPro)
Cec04g1119 224 MobiDBLite consensus disorder prediction 1 20 - -
Cec04g1119 224 FunFam Putative homeobox-leucine zipper protein ATHB-51 65 128 - -
Cec04g1119 224 Coils Coil 129 149 - -
Cec04g1119 224 Gene3D - 64 128 - -
Cec04g1119 224 PRINTS Lambda-repressor HTH signature 103 119 IPR000047 GO:0003677(InterPro)
Cec04g1119 224 PRINTS Lambda-repressor HTH signature 94 103 IPR000047 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1119 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1119 Cec-Chr4:30730177 Cec10g0860 Cec-Chr10:18362584 4.40E-21 dispersed
Cec10g1968 Cec-Chr10:34472096 Cec04g1119 Cec-Chr4:30730177 4.50E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1067 . . Bda01g00378 Bda03g00698 . Bpe03g01259 . Bma10g00067 Cmo06g00428 Cmo14g00247 . Cma07g00874 Car03g01067 . Sed14g0344 Cpe10g00259 Cpe08g01057 Bhi03g01488 Tan03g1160 Cmetu08g1203 . Hepe04g0996 . . Cla04g00953 Cam04g0993 Cec04g1119 Cco04g1177 Clacu04g1022 Cmu04g1007 Cre04g1063 Cone3ag0210 Cone10ag0192 . . Lsi01g01262 Csa06g02646 Chy08g00904 Cme04g02449 Blo07g01368 . . Bda05g01196 . Bpe02g00744 . . Sed02g0582 Cmo03g01175 . Cma06g00431 . Car06g00370 Car14g00235 Cpe03g00223 Cpe19g00447 Bhi11g02000 Tan08g1793 Cmetu04g0403 . . . . Cla10g01857 Cam10g1913 Cec10g1968 Cco10g1941 Clacu10g1929 Cmu10g2673 Cre10g2062 Lsi03g01953 Csa03g03360 Chy04g01982 Cme08g01238
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001207 3 2 1 3 3 2 4 2 2 2 2 2 2 2 2 4 2 2 5 2 2 3 2 3 3 2 2 6 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29326 PF00046 Homeodomain 1.60E-17 CL0123 Cec TF