Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec04g1120 | ATGCACTCCAATCACTTGCTTCTCGAGGAGCCCATTCGAATGGCTTCCATTTTGGAGCCTTCCAAGGCTAGCTTCTTTCCTACGATGACAAAAATTGTTGGTACTCTGGGTCCTAAGTCTCGATCTGTCGAACTTATTTCTGCGTGTTTGAGGGCTGGAATGTCGGTTGCTCGGTTCGACTTTTCATGGGGTGATCCGGATTACCATCAAGAGACTTTGGAAAATTTGAAGATGGCTGTTAAAAGCACCAAGAAACTTTGCGCTGTTATGCTGGATACGGCGGGTCCTGAGGTGCTGGTTGTAAATAGATGTGAGAAATCTATCCCTCTTCAAGAAGATGGGTTTGTTGTTTTGACACCCAATCAAGAACTAGAGCCGTCTTCGGAGCTGCTGCCTATAAATTATGATGGACTTTCAAAGGTCGTTAAGAAAGGAGACACCCTTTTTCTTGGTCAGTACCTCTTCACTGGAAGTGAAACAACTTCTGTCTGGTTGGAGGTTTCCGAAGTGAAGGGAGATGATGTTGTTTGTGTGGTAAAGAACTCTGCCACGTTGGTTGGTTCGATGTACACTTTGCATGCTGCTGAAATTCACATTGATCTTCCAACACTTACTGAAAAAGATAAAGAGATTATAGCAACATGGGGAGTGAAAAACAAGATTGACTTCCTCTCTCTGTCACATGCTAGACATGCGGAGGATGTTCGACAGGCTCGACAATTTCTTTCTAAGCTAGGCGACCTCAGCCAAACTCAAATATTTGCAAAGATTGAAAGTGTAGAGGGATTAACCCATTTTGACGATATACTAAAAGAAGCAGATGGTATTATTCTTGCTCGTGGCAATTTGGGGTTAGATCTCCCTCCTGAGAAGGTGTTCTTGTTTCAGAAAACTGCCCTTTATAGATGCAATATGGCTGGAAAGCCTGCTGTTTTAACTCGTGTGGTGGACAGCATGACTAACAACTTGAGACCTACACGTGCCGAAGCTACTGATGTTGCCAATGCTGTACTTGATGGAAGTGATGCAATTCTTCTTGGGGCTGAGACATTGCGTGGATTATATCCAGTAGAAACCGTTTCAACTGTTAGTAGAATATGCGCTGAGTCAGAGAAGGTTTTCAATCAAGATTTGTATTTCAAGAAGGCAGTCAAACACATTGGGGAGCCAATGTCACACTTGGAATCTATTGCTTCCTCAGCGGTTAGGGCAGCCATTAAAGTGAAGGCTTCCGTGATTATATGCTTTACTTCATCTGGAAGGGCTGCTAGATTAATTGCAAAGTATAGGCCAACAATGCCCGTTATATCTGTTGTCATTCCAAGACTGAAGACAGATCAATTAAGGTGGAGTCTGAGTGGGGCATTTGAGGCTCGACAATCACTAATTATCAGAGGACTTTTCCCTGTGCTTGCTGATCCTCAACACCTAGCGGACTCTAACAATGCAACGAATGAGTCAGTTCTTAAGGCTGCTCTAGATCATGGAAAGTTAGCAGGAATCATTAAGGCACATGACCGTGTAGTGGTTTGCCAGAAAGTTGGGGATGCATCAATTTGGTCCACCTATGGCGCCGCCTGTGCACAGGACACCCCACATTGGTTCTGTTCTGGGTGA | 1617 | 44.22 | MHSNHLLLEEPIRMASILEPSKASFFPTMTKIVGTLGPKSRSVELISACLRAGMSVARFDFSWGDPDYHQETLENLKMAVKSTKKLCAVMLDTAGPEVLVVNRCEKSIPLQEDGFVVLTPNQELEPSSELLPINYDGLSKVVKKGDTLFLGQYLFTGSETTSVWLEVSEVKGDDVVCVVKNSATLVGSMYTLHAAEIHIDLPTLTEKDKEIIATWGVKNKIDFLSLSHARHAEDVRQARQFLSKLGDLSQTQIFAKIESVEGLTHFDDILKEADGIILARGNLGLDLPPEKVFLFQKTALYRCNMAGKPAVLTRVVDSMTNNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETVSTVSRICAESEKVFNQDLYFKKAVKHIGEPMSHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVISVVIPRLKTDQLRWSLSGAFEARQSLIIRGLFPVLADPQHLADSNNATNESVLKAALDHGKLAGIIKAHDRVVVCQKVGDASIWSTYGAACAQDTPHWFCSG | 538 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 30739970 | 30759125 | - | CePI673135_04g011200.1 | Cec04g1120 | 200602 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec04g1120 | 538 | SUPERFAMILY | PK C-terminal domain-like | 358 | 513 | IPR036918 | - | |
| Cec04g1120 | 538 | Gene3D | - | 29 | 370 | IPR040442 | - | |
| Cec04g1120 | 538 | FunFam | Pyruvate kinase | 96 | 202 | - | - | |
| Cec04g1120 | 538 | Gene3D | - | 371 | 513 | IPR036918 | - | |
| Cec04g1120 | 538 | Pfam | Pyruvate kinase, alpha/beta domain | 395 | 514 | IPR015795 | - | |
| Cec04g1120 | 538 | FunFam | Pyruvate kinase | 371 | 513 | - | - | |
| Cec04g1120 | 538 | PANTHER | PYRUVATE KINASE | 13 | 513 | IPR001697 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0004743(PANTHER)|GO:0005737(PANTHER)|GO:0006096(InterPro)|GO:0006096(PANTHER)|GO:0030955(InterPro) | |
| Cec04g1120 | 538 | NCBIfam | pyruvate kinase | 29 | 514 | IPR001697 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) | |
| Cec04g1120 | 538 | SUPERFAMILY | PK beta-barrel domain-like | 96 | 186 | IPR011037 | - | |
| Cec04g1120 | 538 | SUPERFAMILY | Phosphoenolpyruvate/pyruvate domain | 7 | 375 | IPR015813 | GO:0003824(InterPro) | |
| Cec04g1120 | 538 | Gene3D | - | 96 | 202 | IPR015806 | GO:0004743(InterPro)|GO:0006096(InterPro) | |
| Cec04g1120 | 538 | Pfam | Pyruvate kinase, barrel domain | 30 | 360 | IPR015793 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) | |
| Cec04g1120 | 538 | PRINTS | Pyruvate kinase family signature | 221 | 235 | IPR001697 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) | |
| Cec04g1120 | 538 | PRINTS | Pyruvate kinase family signature | 85 | 101 | IPR001697 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) | |
| Cec04g1120 | 538 | PRINTS | Pyruvate kinase family signature | 253 | 279 | IPR001697 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) | |
| Cec04g1120 | 538 | PRINTS | Pyruvate kinase family signature | 348 | 364 | IPR001697 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) | |
| Cec04g1120 | 538 | PRINTS | Pyruvate kinase family signature | 329 | 347 | IPR001697 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) | |
| Cec04g1120 | 538 | PRINTS | Pyruvate kinase family signature | 280 | 304 | IPR001697 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec04g1120 | Cec-Chr4:30739970 | Cec11g1334 | Cec-Chr11:27607866 | 4.80E-106 | dispersed | |
| Cec04g1120 | Cec-Chr4:30739970 | Cec04g1121 | Cec-Chr4:30765216 | 7.90E-250 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec04g1120 | K00873 | - | csv:101206620 | 979.548 |