Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1129 ATGGAAATGCCTGGAAGGAGGTCAGATTACTCGCTTTTAAGTCAAATTCCGGACGAGGAGGTGGGAACGGGAGCTTCCACTTCCTTTTACGACTCAATAGCAGCTGGCGGAAACGTTTACAAGGGGAGAACCGATAGAGTTTTTGATTGGGATGGGAGTGGTGATCACAGGTTAAACACGCAAGCGAATCGGATAGGGAACCTGTATTCATGGATTGGTTTGCAGAGGCATTCTAGTGGAAGCAGCTACGATGATAGCTCTCTCTCCAGTGATTACTACGCGCCGACGCTCTCAAACGCTGCAGCAAATGAGATCAATGCATTGGGATATATCAACGACGATGAATTCAGAGTGAAAACTTTGGCAAGTGGAGGTTCGTCAGGAAAGAGCTGGGCGCAGCAGACGGAAGAGAGTTATCAATTGCAGCAGGCTTTGGCTCTCAGGCTTTCTTCAGAGGCTACTTGTGCCGATGATCCCAACTTTATGGATCCGATGCCAGACGAGGCAGCTTTAAGATCGTTGTCGAGTTCAGCTGAGGCCACCTCGCATCGATTCTGGGTAAATGGATGCATGTCATATTTTGAGAAAGTGCCAGATGGTTTTTATCTAATTCATGGGATGGACCCCTATGTATGGTCATTATGCACCAATCTGCAAGAGGATGGCCGTATACCATCATTTGAATCTCTGAAGACAGTTGATTCCAGTGCTGGTTCATCAATTGAAGTAGTTTTGATAGATCGGCATAGTGATGCTAGCTTAAAGGAACTGCAAAACAGGGTGCATCATATTTCTTCTAGTTGTATAACCACAAAAGAGGTTGCAGATCATTTAGCAAAGCTGGTATGCAATCACTTGGGGGGTTCGGTTTCTGAGGGAGAAGATGACTTGGTTTCGTCCTGGAGGGAATGCAGTGATGACTTAAAAGAATGTTTGGGATCTGCTGTGATTCCCTTATGCAGCTTATCTGTTGGCCTTTGCAGACATCGTGCTCTTTTATTCAAAGTGTTAGCTGATTCTATAGATTTGCCCTGTCGAATTGCTAGGGGCTGTAAATATTGCACTAGAGATGATGCTTCATCTTGCCTTGTTAGGTTCGGGCTTGATAGGGAATATCTCATTGATCTGATTGGGAAGCCAGGTTGCTTATGCGAACCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCAAGACTAAAACCTATTGAATCTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTTGGATAGCCAATCACTTAATATTGTATTTGATGAAGCTTCTTCAGGGAATGTTGTATCTGGGAAGGATGCTGCGTTCTCTGTCTATCAAAGGCCATTAAATAGGAAGGATGGGGATGGAAAAAACATAGTGCTTACTGGTGACAGGGACAGAAGTTCTCAGTTATTGAATCCAAAATCTGCCCAACTGAGTACTCAAGATGGAAAGTCTGAGCAATTTAGATCATGTATTACTTCTCAATCTACTGTACAGTCTACCCCTTTTGTAGACAACGTAGTCCCTTTAAACCATATCTCACAGATTGGTTCCAGAGATTCTGAGCCTCTCTTAGCATTGTCTCATGTAAGGGTGGATCATGCTAACAATTTATCATTTATTGACGGTAGTCAACTGATTAGAAAACCAAATGAGCTTTCCTTTGGCATTGAAGATTTGGTTATTCCATGGAAAGATCTTGTTTTGAGGGAGAAAATTGGGGCAGGTTCTTTTGGGACTGTATATCATGCTGATTGGCACGGCTCAGATGTTGCTGTGAAGATTCTGATGGAACAAGACCTACATGCAGAACATTTTGATGAATTTCTTAGGGAGGTTGCCATAATGAAATGTCTACGACACCCGAACATTGTTCTCTTTATGGGTGCAGTCACAGAGCCTCCAAACTTGTCCATTGTCACAGAATACTTATCAAGGGGTAGTTTGCACAGGCTTTTGCATAGGCCTGGGGCAAGAGAAGTCTTAGACGAGAGACGACGGTTAAACATGGCATATGATGTTGCAAAGGGAATGAATTATCTTCACAAACGTAACCCCCCAATTGTTCATCGTGATTTGAAATCTCCAAATCTTTTAGTTGATAAGAAGTACACAGTAAAGGTTTGTGATTTTGGGCTTTCACGTTTAAAGGCACACACGTTTCTTTCGTCAAAATCAGCTGCTGGGACTCCTGAGTGGATGGCACCAGAAGTTCTCCGTGATGAGCCATCAAATGAGAAATCGGATGTTTATAGCTTTGGTGTGATTCTGTGGGAGCTTGCTACATTGCAGCAACCATGGGGCAACTTGAACCCAGCGCAGGTTGTGGCAGCCGTAGGTTTCAAAGGCAAAAGGCTTGAGATCCCACGTGATTTAAATCCCCAAGTTGCTACTATTATAGAGGCTTGCTTTGCCAGTGAGCCCTGGAAACGTCCTTCCTTTTATGAAATAATGGAATCGTTGAAGCCATTGATCAAACCTGCTACGCCTCATCAAATTCGCTCAAAATTGAAAGCTTGCAATCTTGAACAACTAGACTATAGTCTTCTTTCCAGAATGCAAGCTTCTACTTCCATCCTGAAAGATTCATTCATGTATATTAATTTCTTCGCTGAAAGTGCCTCCATTTTTGAGCTTGGGAGGCAAACCCTTCCCACTACTTTGACATCTTTTGGCGACTGGGAACAGATCAAGCGCTAA 2727 43.31 MEMPGRRSDYSLLSQIPDEEVGTGASTSFYDSIAAGGNVYKGRTDRVFDWDGSGDHRLNTQANRIGNLYSWIGLQRHSSGSSYDDSSLSSDYYAPTLSNAAANEINALGYINDDEFRVKTLASGGSSGKSWAQQTEESYQLQQALALRLSSEATCADDPNFMDPMPDEAALRSLSSSAEATSHRFWVNGCMSYFEKVPDGFYLIHGMDPYVWSLCTNLQEDGRIPSFESLKTVDSSAGSSIEVVLIDRHSDASLKELQNRVHHISSSCITTKEVADHLAKLVCNHLGGSVSEGEDDLVSSWRECSDDLKECLGSAVIPLCSLSVGLCRHRALLFKVLADSIDLPCRIARGCKYCTRDDASSCLVRFGLDREYLIDLIGKPGCLCEPDSLLNGPSSISISSPLRFPRLKPIESTIDFRSLAKQYFLDSQSLNIVFDEASSGNVVSGKDAAFSVYQRPLNRKDGDGKNIVLTGDRDRSSQLLNPKSAQLSTQDGKSEQFRSCITSQSTVQSTPFVDNVVPLNHISQIGSRDSEPLLALSHVRVDHANNLSFIDGSQLIRKPNELSFGIEDLVIPWKDLVLREKIGAGSFGTVYHADWHGSDVAVKILMEQDLHAEHFDEFLREVAIMKCLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLNMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKAHTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKGKRLEIPRDLNPQVATIIEACFASEPWKRPSFYEIMESLKPLIKPATPHQIRSKLKACNLEQLDYSLLSRMQASTSILKDSFMYINFFAESASIFELGRQTLPTTLTSFGDWEQIKR 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30890404 30898554 + CePI673135_04g011290.1 Cec04g1129 200611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1129 908 PRINTS Tyrosine kinase catalytic domain signature 691 709 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1129 908 PRINTS Tyrosine kinase catalytic domain signature 650 663 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1129 908 PRINTS Tyrosine kinase catalytic domain signature 801 823 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1129 908 PRINTS Tyrosine kinase catalytic domain signature 738 748 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1129 908 PRINTS Tyrosine kinase catalytic domain signature 757 779 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1129 908 PANTHER SERINE-THREONINE PROTEIN KINASE 169 833 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cec04g1129 908 ProSitePatterns Protein kinases ATP-binding region signature. 582 603 IPR017441 GO:0005524(InterPro)
Cec04g1129 908 FunFam Serine/threonine-protein kinase isoform 1 567 654 - -
Cec04g1129 908 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1129 908 Pfam Ethylene-responsive protein kinase Le-CTR1 178 384 - -
Cec04g1129 908 SUPERFAMILY Protein kinase-like (PK-like) 554 830 IPR011009 -
Cec04g1129 908 ProSiteProfiles Protein kinase domain profile. 576 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1129 908 SMART serkin_6 576 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1129 908 Pfam Protein tyrosine and serine/threonine kinase 577 830 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1129 908 Gene3D Transferase(Phosphotransferase) domain 1 655 844 - -
Cec04g1129 908 FunFam Serine/threonine-protein kinase CTR1 655 840 - -
Cec04g1129 908 Gene3D Phosphorylase Kinase; domain 1 569 654 - -
Cec04g1129 908 CDD STKc_MAP3K-like 582 830 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1129 Cec-Chr4:30890404 Cec05g1963 Cec-Chr5:31680992 5.40E-118 dispersed
Cec05g0407 Cec-Chr5:3336970 Cec04g1129 Cec-Chr4:30890404 1.20E-48 transposed
Cec06g1382 Cec-Chr6:27330117 Cec04g1129 Cec-Chr4:30890404 2.50E-48 transposed
Cec11g1517 Cec-Chr11:29376439 Cec04g1129 Cec-Chr4:30890404 8.00E-173 transposed
Cec10g1954 Cec-Chr10:34337981 Cec04g1129 Cec-Chr4:30890404 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71912 PF07714 PK_Tyr_Ser-Thr 3.20E-69 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1129 K14510 - csv:101208800 1567.36