Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1145 ATGGCGGAAGAGCACAGATGCCAAGCACCTGAAGGCCATCGTCTCTGCGCTAATAATTGCGGCTTCTTCGGTAGCCCAGCTACCATGGATCTCTGCTCCAAATGTTACAGAGACTTCCGTCTTAAAGAACAAGAACAAGCCTCCACCAAATCCACCATCGAAGCCGCTCTCTCGGCCTCATCATCTCCTTCTCCTTCCTCTTCCCCAATCGATCCTCCCCCCGTTCCCCCTGTTGTCGCCTTGTCCCCGCCGGACTCCACCACAGATCTGACCATCCCTCCCCTCGCGGCCGTCGGATCTGAGGCCGCAAACCAACCGAATCCTACTCCGAACCCCAACCCCAACCCAAACCGTTGTTCGTCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAAATGCAGATGCGGAACCACGTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGCTGCGCCTTCGACTTCAAGTCAATTGGAAGAGAGGAGATCGCTCGAGCGAACCCCGTCGTCAAAGCCGATAAACTGGAAAGGATTTGA 537 55.87 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSSPSPSSSPIDPPPVPPVVALSPPDSTTDLTIPPLAAVGSEAANQPNPTPNPNPNPNRCSSCRKKVGLTGFKCRCGTTFCGAHRYPEKHGCAFDFKSIGREEIARANPVVKADKLERI 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31069033 31069569 + CePI673135_04g011450.1 Cec04g1145 200627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1145 178 MobiDBLite consensus disorder prediction 46 118 - -
Cec04g1145 178 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cec04g1145 178 MobiDBLite consensus disorder prediction 48 65 - -
Cec04g1145 178 Gene3D - 1 69 - -
Cec04g1145 178 Pfam AN1-like Zinc finger 119 155 IPR000058 GO:0008270(InterPro)
Cec04g1145 178 FunFam Zinc finger AN1-type containing 6 96 174 - -
Cec04g1145 178 ProSiteProfiles Zinc finger AN1-type profile. 113 159 IPR000058 GO:0008270(InterPro)
Cec04g1145 178 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Cec04g1145 178 SMART AN1_Zf_4 119 156 IPR000058 GO:0008270(InterPro)
Cec04g1145 178 PANTHER AN1-TYPE ZINC FINGER PROTEIN 11 178 IPR050652 -
Cec04g1145 178 SMART A20_3 13 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cec04g1145 178 SUPERFAMILY AN1-like Zinc finger 102 173 IPR035896 -
Cec04g1145 178 MobiDBLite consensus disorder prediction 66 81 - -
Cec04g1145 178 Gene3D - 96 174 IPR035896 -
Cec04g1145 178 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2332 Cec-Chr2:40620329 Cec04g1145 Cec-Chr4:31069033 2.80E-41 dispersed
Cec04g1145 Cec-Chr4:31069033 Cec09g0427 Cec-Chr9:3653577 9.50E-35 dispersed
Cec04g1145 Cec-Chr4:31069033 Cec01g0346 Cec-Chr1:3549116 2.90E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1145 - - - 0.0