Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1183 ATGCGTGGCGCCTCTCGAGCTCCGAACAGGTCGGAGCCACTGCCTCAGTCCCAAACTGCCCAGATCCTGCCGCCTCTCAAGCGCCACCTTGCTTTTGACTCCGCTAAGCCGCCCTTCGCTCCTCCGGGTCATTATTACCACTTCGGCGGCGGTTCCTCCAATGCTATTGATCAACAACCTGATTCCATCGTTGTTAAACCTCTTAAACCAAAGCAGAAGGGTGTCATGTATAACAATGTGGTTGAATCGAATGATTACAGTCATGATCAGGGATCTTCTCTTAGTTCTGTGCAGACACCTGTGTCTGGAAAAGGAGGAAGGGTGTACAATAAGTCGAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCCCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATACTGGAAAGGTTTCAATCAACAAATTCTAGGAAATGTGGATTGCGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGTAATGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATATCCAAAAGTGGCTCTTTGTGACAGAAGAAGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACCTTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATACCGGATAGTTCTTAGGAGTACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTCGAGGAAAAGTTTGAGGAGATGAATGTGGTTCCGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATCATCGGGGAGAGTAGTAGAAACGAAATTGAACCTCAAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCCAATGAGTTTCCTGGTGGAATGATGAAGATTATTCCTTCAGATGTCGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACCGATTCTACAGCAGATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTTTTAATATCTGATGTCAGTGCTCAAAGGCCAAGACCAGGAAGCCCACATTCAGAGACAGCCGAAGCAGCATCTGATAATACAATTGCGAGCGCTAGTCGGGCGGGGAGTGCAGAGGAAATAGAAACAAACTTTGGTAAGGTTGCAGATGGGAAGAAGCATGTAAGATAG 1488 43.28 MRGASRAPNRSEPLPQSQTAQILPPLKRHLAFDSAKPPFAPPGHYYHFGGGSSNAIDQQPDSIVVKPLKPKQKGVMYNNVVESNDYSHDQGSSLSSVQTPVSGKGGRVYNKSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQILGNVDCDTSMLQVDVENLSFEERRLDDKIRVMQERLRNLSEDENIQKWLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVPPPSSFLHASSSGSNEHLATEAIIGESSRNEIEPQAHLSQHSSSCDVNGSNEFPGGMMKIIPSDVDNDADYWLLSDAEVSITDMWRTDSTADIAWDQSDMVPHDFLISDVSAQRPRPGSPHSETAEAASDNTIASASRAGSAEEIETNFGKVADGKKHVR 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31425840 31432655 - CePI673135_04g011830.1 Cec04g1183 200665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1183 495 SUPERFAMILY Winged helix DNA-binding domain 142 205 IPR036390 -
Cec04g1183 495 MobiDBLite consensus disorder prediction 1 38 - -
Cec04g1183 495 MobiDBLite consensus disorder prediction 446 495 - -
Cec04g1183 495 Gene3D - 136 210 IPR036388 -
Cec04g1183 495 MobiDBLite consensus disorder prediction 459 477 - -
Cec04g1183 495 Coils Coil 234 254 - -
Cec04g1183 495 Gene3D - 215 324 - -
Cec04g1183 495 PANTHER TRANSCRIPTION FACTOR E2F 59 422 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Cec04g1183 495 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983(InterPro)
Cec04g1183 495 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec04g1183 495 MobiDBLite consensus disorder prediction 83 135 - -
Cec04g1183 495 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec04g1183 495 CDD E2F_DD 223 324 IPR032198 GO:0046983(InterPro)
Cec04g1183 495 FunFam E2F transcription factor 1 136 209 - -
Cec04g1183 495 SUPERFAMILY E2F-DP heterodimerization region 222 324 IPR037241 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1183 Cec-Chr4:31425840 Cec06g1865 Cec-Chr6:31998011 1.00E-09 dispersed
Cec02g2351 Cec-Chr2:40745891 Cec04g1183 Cec-Chr4:31425840 1.30E-136 wgd
Cec04g1183 Cec-Chr4:31425840 Cec08g1486 Cec-Chr8:26572878 2.50E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29332 PF16421 E2F_CC-MB 5.20E-33 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1183 K06620 - csv:101212480 739.184