Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1189 ATGGGGGTTCCACAGGCCATGGAAATTCTCAACGAGAGAGCCGCACTTGTGCGAGAGTCGCTTCAAAAGAGCCAAAATGTCACCGAGAACATGGTCTCCATTCTTGGCTCCTTCGACTACCGTCTCTCCGCCCTCGAAACAGCAATGCGCCCTACTCAGATAAGAACTCATTCAATTCGGAGGGCGCATGAGAATATTGACAAGACATTGAAGGCTGCAGAAAGTATGCTAGCTCAGTTTGATCTTACACGCAAGGCCGAGGCTAAAATACTCAGGGGGCCACATGAGGACTTAGAAATGTACTTGGAAGCAATTGATCAATTACGAAGCACAAATCGCTACTTTACTGGGAACAAAATTTTCAAATGTAACGATGCTATTCTGACCCACACAAGCAACTTACTTGTTAAAGCCATTTCAAAGCTGGAAGATGAGTTCAGACAGCTTTTAACAAATTACAGTAAGCCAGTGGAACCTGATCGTCTATTCGATTGCCTCCCCAACTCTTTGCGTCCATCATCAGCATCTGCACATCATGGTGATAGTGGTAGCAAAAATAATTCTGACCATCACAACAAAAGCTTAGAAGCTGCCACCTTCATTCCCCCAACTCTTATTCCTCCCAGGGTTCTTCCATTGTTGCATGATTTGGCCCAACAAATGATTCTGGCTGGTCATCAGCAGCAACTGTTTAGAATATACAGGGATACTCGCGCTTCAGTTTTAGAACAGAGTCTTAGGAAATTAGGTGTCGAGAGGCTTAGCAAGGATGATGTCCAGAAAATGCAGTGGGAGGCTCTTGAAGCGAAGATTGGGAACTGGATACATTACATGCGCATTGCTGTCAAATTGCTGTTTGCTGGGGAAAGGAAAATATGTGATCAAATATTTGACGGTGCAGACTCTCTCCAGGATCAATGCTTTGCGGATGTGACTTCAAACAGTGTGTCAGTGCTACTAAGTTTTGGAGAGGCAATTGCCAAAAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTTTAGACATGTATGAAATAATGCGAGAACTGCAGTCTGAGATTGAAACACTTTTTGGAAGTAAAGCATGTGTTGAAATGCGGGATTCTGCATTGAACTTAACCACACGCCTTGCCGAGACAGCTCAAGAGACATTTGTTGATTTTGAAGAAGCCGTAGAAAAAGATGCCACAAAAACTGCTGTTCTTGATGGGACTGTTCATCCCTTGACTAGTTATGTGATAAATTACGTCAAGTTTTTGTTTGACTACCAATCTACTTTGAAGCAGCTATTCCAAGATTTTGACGCCAGTGATCCAGATGCTCAGCTAGCAGTGGTAACTACAAGAATTATGCAGGCCCTTCAGACTAATCTTGATGGGAAATCTAAGCAATATAGGGATCCTGCACTAACTCAATTATTTCTGATGAACAATATTCACTATATAGTGAGATCCGTCCGAAGATCGGAGGCAAAGGATTTGTTGGGTGATGACTGGGTGCAGATACATCGAAGGATTGTTCAGCAGCATGCGAATCAATACAAGCGGATTTCTTGGGCAAAGATTTTGCAGTGCCTCACAGTTCAAGCCTCAGGTAGTGGTGGTGCTTCGGGAGATGCTAGCAGTGGACTTTCAAGAGCTATGGTGAAAGATAGGTTTAAGACTTTTAACATCCAATTTGAAGAGCTTCATCAACGACAATCTCAGTGGACAGTTCCTGACAGTGAGTTGCGGGAGTCATTGAGGTTGGCAGTTGCTGAAGTTTTATTGCCTGCCTACCGATCCTTCATCAAGCGTTTCGGGCCTATGATTGAGAATGGGAAAAATCCTCAAAAATATATCAGATATTCACCCGAGGATCTCGAGCGTATGCTAAATGAATTTTTTGAGGGCAAGACATTCAGTGAACAAAAACGCTAG 1917 43.24 MGVPQAMEILNERAALVRESLQKSQNVTENMVSILGSFDYRLSALETAMRPTQIRTHSIRRAHENIDKTLKAAESMLAQFDLTRKAEAKILRGPHEDLEMYLEAIDQLRSTNRYFTGNKIFKCNDAILTHTSNLLVKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNSLRPSSASAHHGDSGSKNNSDHHNKSLEAATFIPPTLIPPRVLPLLHDLAQQMILAGHQQQLFRIYRDTRASVLEQSLRKLGVERLSKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGERKICDQIFDGADSLQDQCFADVTSNSVSVLLSFGEAIAKSKRSPEKLFVLLDMYEIMRELQSEIETLFGSKACVEMRDSALNLTTRLAETAQETFVDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQDFDASDPDAQLAVVTTRIMQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQASGSGGASGDASSGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFIKRFGPMIENGKNPQKYIRYSPEDLERMLNEFFEGKTFSEQKR 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31470636 31477942 - CePI673135_04g011890.1 Cec04g1189 200671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1189 638 PANTHER EXOCYST COMPLEX PROTEIN EXO70 13 631 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cec04g1189 638 Pfam Exocyst complex component Exo70 N-terminal 69 151 - -
Cec04g1189 638 Pfam Exo70 exocyst complex subunit C-terminal 273 626 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cec04g1189 638 Gene3D Exocyst complex component Exo70 75 638 - -
Cec04g1189 638 SUPERFAMILY Cullin repeat-like 76 629 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1189 K07195 - - csv:105436019 1199.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0992 Cec-Chr4:29578521 Cec04g1189 Cec-Chr4:31470636 7.70E-49 dispersed
Cec04g1189 Cec-Chr4:31470636 Cec05g2404 Cec-Chr5:35320135 2.10E-281 dispersed
Cec04g1189 Cec-Chr4:31470636 Cec03g0196 Cec-Chr3:2030574 1.20E-82 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g2404 . 12 653 EXO70 exocyst subunit family AT5G03540 76.6 9.9e-287 982.6
Cec04g1189 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 2.5e-266 914.8
Cec04g1189 . 1 638 EXO70 exocyst subunit family AT5G52340 80.3 1.1e-298 1022.3
Cec05g2404 . 14 653 EXO70 exocyst subunit family AT5G52340 75.2 4.1e-274 940.6
Cec04g1189 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 2.2e-176 615.9
Cec05g2404 . 149 653 EXO70 exocyst subunit family AT5G52350 60.3 2.8e-168 589.0
Cec03g0044 . 1 623 EXO70 exocyst subunit family AT5G58430 66.7 1.0e-245 846.3
Cec03g0044 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 7.8e-174 607.4
Cec07g1652 . 60 673 EXO70 exocyst subunit family AT5G13150 53.3 2.9e-174 609.0
Cec01g0878 . 111 722 EXO70 exocyst subunit family AT5G13990 54.5 1.0e-188 657.1
Cec07g1568 . 9 609 EXO70 exocyst subunit family AT1G72470 65.0 1.3e-216 749.6
Cec07g1568 . 9 607 EXO70 exocyst subunit family AT1G54090 61.8 3.9e-208 721.5
Cec07g1568 . 9 608 EXO70 exocyst subunit family AT3G14090 64.2 2.4e-218 755.4
Cec03g1406 . 27 664 EXO70 exocyst subunit family AT5G50380 61.7 1.1e-224 776.5
Cec03g0358 . 15 627 EXO70 exocyst subunit family AT5G50380 61.1 4.8e-212 734.6
Cec08g1297 . 11 682 EXO70 exocyst subunit family AT4G31540 73.6 1.3e-294 1008.8
Cec10g2088 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 2.5e-178 622.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74