Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g1193 | ATGAACGATCTGTTTTCCACCGATTCCTTCCGCCGACAGCAGCACCGCCATGACTCCGTCGAGATTCCCGACAAAGCGCCGTCGTCAACGACTATCAATCTCAACAGTTTCTTCGACGACGTGGAGTCCGTGAAGGCGGAATTGACGGAGCTCGAACGCCTGTATCGAAGCCTCCAGAATTCTCACGAACAGAGCAAAACTCTTCACAATTCGAAGGCGATTAAGGATCTTCGATCGCGAATGGAATCGGATGTGACTCTGGCTCTGAAGAAGGCTAGGTTTATCAAGCTCCGGTTGGAGGAACTGGACCGGTCCAATGCCGAGAACCGGAATCTTCCTGGTTGTGGCTATGGCTCCTCCGCCGACCGGTCAAGAACTTCCGTCGTCAATGGATTGAGGAAGAAGCTGTGTGATTCGATGGAGAGTTTCAATAGATTAAGAGAGGAGATTTCGTCGACGTATAAGGAGACGATTGAACGAAGGTATTTCACAATTACAGGGGAAAATCCTGATGAGAAGACGGTTGATTTGTTGATCTCTACAGGCGAAAGCGAAACATTCTTGCAAAAAGCAATACAAAAGCAAGGAAGAGGAAGAGTTTTGGAAACAATCCAAGAGATTCAAGAAAGGCATGAGGCAGTGAAAGACATAGAGAGGAATTTGAGAGAGCTGCACCAAGTTTTCATGGACATGGCGGTGCTGGTTCAATCTCAGGGGCAGCAGTTGGACGATATCGAGAGCCAAGTGACTCGAGCCAACTCCGCTGTCAAGCGCGGCACCACGGAGCTACAAACTGCAAGATACTACCAGAAAAACACTCGCAAATGGATCTGCATAGGCGTCATCGTTCTCGCACTCATTCTCTTCATCATTATCATCTCCGTCGTCCTTTCCAAGAAGTAG | 903 | 48.62 | MNDLFSTDSFRRQQHRHDSVEIPDKAPSSTTINLNSFFDDVESVKAELTELERLYRSLQNSHEQSKTLHNSKAIKDLRSRMESDVTLALKKARFIKLRLEELDRSNAENRNLPGCGYGSSADRSRTSVVNGLRKKLCDSMESFNRLREEISSTYKETIERRYFTITGENPDEKTVDLLISTGESETFLQKAIQKQGRGRVLETIQEIQERHEAVKDIERNLRELHQVFMDMAVLVQSQGQQLDDIESQVTRANSAVKRGTTELQTARYYQKNTRKWICIGVIVLALILFIIIISVVLSKK | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 31507906 | 31509442 | + | CePI673135_04g011930.1 | Cec04g1193 | 200675 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g1193 | 300 | Pfam | SNARE domain | 241 | 292 | IPR000727 | - | |
Cec04g1193 | 300 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 31 | 161 | - | - | |
Cec04g1193 | 300 | Gene3D | - | 199 | 298 | - | - | |
Cec04g1193 | 300 | SUPERFAMILY | t-snare proteins | 33 | 259 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cec04g1193 | 300 | SMART | tSNARE_6 | 199 | 266 | IPR000727 | - | |
Cec04g1193 | 300 | CDD | SynN | 34 | 191 | IPR006011 | GO:0016020(InterPro) | |
Cec04g1193 | 300 | ProSitePatterns | Syntaxin / epimorphin family signature. | 210 | 249 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cec04g1193 | 300 | Gene3D | - | 32 | 164 | - | - | |
Cec04g1193 | 300 | PANTHER | SYNTAXIN | 36 | 287 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cec04g1193 | 300 | MobiDBLite | consensus disorder prediction | 9 | 23 | - | - | |
Cec04g1193 | 300 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 204 | 266 | IPR000727 | - | |
Cec04g1193 | 300 | Pfam | Syntaxin | 36 | 239 | IPR006011 | GO:0016020(InterPro) | |
Cec04g1193 | 300 | Coils | Coil | 34 | 68 | - | - | |
Cec04g1193 | 300 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cec04g1193 | 300 | FunFam | Syntaxin 132 | 197 | 297 | - | - | |
Cec04g1193 | 300 | CDD | SNARE_syntaxin1-like | 203 | 265 | - | - | |
Cec04g1193 | 300 | Coils | Coil | 204 | 224 | - | - | |
Cec04g1193 | 300 | SMART | SynN_4 | 29 | 155 | IPR006011 | GO:0016020(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec03g0540 | Cec-Chr3:5659439 | Cec04g1193 | Cec-Chr4:31507906 | 2.00E-85 | dispersed | |
Cec04g1193 | Cec-Chr4:31507906 | Cec04g1660 | Cec-Chr4:35814281 | 3.80E-44 | dispersed | |
Cec04g0715 | Cec-Chr4:26294206 | Cec04g1193 | Cec-Chr4:31507906 | 1.90E-59 | transposed | |
Cec10g1365 | Cec-Chr10:27908105 | Cec04g1193 | Cec-Chr4:31507906 | 5.70E-68 | transposed | |
Cec10g1837 | Cec-Chr10:33175462 | Cec04g1193 | Cec-Chr4:31507906 | 4.70E-111 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g1193 | K08486 | - | csv:101213199 | 494.197 |