Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g1194 | ATGAACAACGCCACGGCGGACAGCGGCGGATTTCTTTCCTCAAGCAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCTTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGTACCAGAAACGGCCTATCCTCCTCCGTCATTCAGAGGACCGCCAATCGCTCTCCACCGCAGGCGGAGGAGGAATTAGAAGCCGTCGTCGTCGAAATCGGACTCGATCAGGAGACGATTACGAGTTATCCGAAATTGCTGTACTCGGAAGCGAAGCTTCAGAAGAACGATTCGACTGCCTCTTGTTGTTCAATCTGTTTGGCCGATTACAAGAACTCGGATGTTCTTCGGCTTTTGCCTGATTGCGGTCATCTCTTTCATCTCAAGTGCGTCGATCCGTGGCTGAGGCTTCATCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGTCGGCGCGATTGA | 516 | 53.68 | MNNATADSGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVIQRTANRSPPQAEEELEAVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD | 171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 31512533 | 31513048 | + | CePI673135_04g011940.1 | Cec04g1194 | 200676 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g1194 | 171 | CDD | RING-H2_EL5-like | 105 | 148 | - | - | |
Cec04g1194 | 171 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 14 | 165 | IPR045899 | - | |
Cec04g1194 | 171 | FunFam | E3 ubiquitin-protein ligase ATL6 | 66 | 153 | - | - | |
Cec04g1194 | 171 | SMART | ring_2 | 106 | 147 | IPR001841 | - | |
Cec04g1194 | 171 | SUPERFAMILY | RING/U-box | 82 | 153 | - | - | |
Cec04g1194 | 171 | Pfam | Ring finger domain | 105 | 148 | IPR001841 | - | |
Cec04g1194 | 171 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 152 | IPR013083 | - | |
Cec04g1194 | 171 | ProSiteProfiles | Zinc finger RING-type profile. | 106 | 148 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g1194 | Cec-Chr4:31512533 | Cec08g1098 | Cec-Chr8:22811002 | 6.60E-25 | dispersed | |
Cec05g0147 | Cec-Chr5:1233270 | Cec04g1194 | Cec-Chr4:31512533 | 2.30E-28 | transposed | |
Cec08g0844 | Cec-Chr8:20247967 | Cec04g1194 | Cec-Chr4:31512533 | 3.50E-15 | transposed | |
Cec10g1831 | Cec-Chr10:33120336 | Cec04g1194 | Cec-Chr4:31512533 | 1.00E-46 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g1194 | - | - | - | 0.0 |