Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1194 ATGAACAACGCCACGGCGGACAGCGGCGGATTTCTTTCCTCAAGCAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCTTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGTACCAGAAACGGCCTATCCTCCTCCGTCATTCAGAGGACCGCCAATCGCTCTCCACCGCAGGCGGAGGAGGAATTAGAAGCCGTCGTCGTCGAAATCGGACTCGATCAGGAGACGATTACGAGTTATCCGAAATTGCTGTACTCGGAAGCGAAGCTTCAGAAGAACGATTCGACTGCCTCTTGTTGTTCAATCTGTTTGGCCGATTACAAGAACTCGGATGTTCTTCGGCTTTTGCCTGATTGCGGTCATCTCTTTCATCTCAAGTGCGTCGATCCGTGGCTGAGGCTTCATCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGTCGGCGCGATTGA 516 53.68 MNNATADSGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVIQRTANRSPPQAEEELEAVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31512533 31513048 + CePI673135_04g011940.1 Cec04g1194 200676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1194 171 CDD RING-H2_EL5-like 105 148 - -
Cec04g1194 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 165 IPR045899 -
Cec04g1194 171 FunFam E3 ubiquitin-protein ligase ATL6 66 153 - -
Cec04g1194 171 SMART ring_2 106 147 IPR001841 -
Cec04g1194 171 SUPERFAMILY RING/U-box 82 153 - -
Cec04g1194 171 Pfam Ring finger domain 105 148 IPR001841 -
Cec04g1194 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 152 IPR013083 -
Cec04g1194 171 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1194 Cec-Chr4:31512533 Cec08g1098 Cec-Chr8:22811002 6.60E-25 dispersed
Cec05g0147 Cec-Chr5:1233270 Cec04g1194 Cec-Chr4:31512533 2.30E-28 transposed
Cec08g0844 Cec-Chr8:20247967 Cec04g1194 Cec-Chr4:31512533 3.50E-15 transposed
Cec10g1831 Cec-Chr10:33120336 Cec04g1194 Cec-Chr4:31512533 1.00E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1194 - - - 0.0