Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1199 ATGAACAACGGCAGCGCTCGGAAAAGTCGACCACCGCCGCAGCATCCATCGCCGGCTCCGCCGACCAAGCATCAGGCGCTTTCTCAAGAGGAAGATTTCGTCGACGAAGATGTCTTCCTCGACGAGAATCTTCTCGATGAGGACGCTCTCATCCTCCGCGACATGGAGGAGCGTCAGGCCCTTGCTTCCCGGCTCTCCAAGTGGGCTCGTCCACCTCTTTCCCAGGAATACTTGTCCCAGTCGAAGAGCATCGTGTTTCAGCAATTGGAAATTGATTACGTGATCGGGGAAAGTCACAGAGAACTGTTGCCGAATTTGTCTGGCCCTGCCGCTATTCTTAGAATTTTTGGGGTTACGAGGGAAGGACATAGTGTATGCTGCCACGTTCATGGATTTGAACCGTACTTCTATATCAGTTGTCCTCCAGGCATGGGTCCTGATGATATCTCTCTTTTTCACCGAACTCTTGAGGCTAGAATGAAGGAGGTAAATAGAAACAGTAAAGCACCTAACTTTGTGCGTCGCATTGAATTGGTGCAAAAGAGAAGTATTATGTACTACCAGCAGCAGACTTCTCAACCATTTCTTAAAATTGTAGTTGCACTGCCAACAATGGTCACCAGCTGCCGTGGTATTCTTGATAGAGGCATACAAATTGATGGCTTTGGTATGAAAAGCTTCATGACATATGAAAGCAATGTGCTTTTTGCCCTCCGTTTTATGATTGACTGCAATGTTGTTGGTGGAAACTGGATTGAGGTTCCTGTGGGAAAATATAAGAAAACTGTTAGAAATTTATCATATTGCCAATTGGAGTTTGATTGCCTATATTCAGACTTGATTAGCCATGCCCCAGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATCTTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCGGAGCCGACCCAGGATCCTGTGATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGAACCAACCATTTATTCGAAATGTCATGACCCTTAACTCTTGCTCTCCTATCGCGGGCGTTGATGTCTTATCATTTGATACAGAACGTGAAGTATTGCTGGCTTGGAGGGATCTAATTCGTGAAGCAGACCCTGATATAATAATTGGATATAACATTTGCAAATTCGATTTGCCATATCTAATCGAGAGAGCTGAGGCACTGAAAATACCAGAATTTCCCATATTGGGTCGCATCAGGAACAGCAAAGTTCGTGTCAAAGATACAACTTTTTCTTCAAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTTCAATTTGATTTACTTCAGGCTATGCAACGGGATTATAAATTAAGTTCGTACTCGTTGAATTCTGTCTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCGGATCTTCAAAATGGTAATGCAGAAACACGGAGACGGCTTGCTGTTTATTGTTTAAAGGATGCGTATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCTATTTCTTTTCTTCTTTCGAGAGGGCAAAGCATCAAGGTACTCTCTCAACTCCTTAGGAAGGCAAAACAGAAAAACCTCGTTATTCCAAATGCTAAACATGCAGGATCTGATCAAGGAACCTATGAGGGTGCTACTGTTTTGGAAGCGAGGGCTGGGTTCTATGAAAAGCCCATTGCTACGCTGGATTTTGCATCTCTATATCCATCCATCATGATGGCATATAATTTATGTTATTGCACTCTGGTTACTCCAGAAGATGCTCGCAAGCTAAACCTGCCCCCTGAACATTTCAACAAAACCCCATCTGGTGAGATATTTGTCAAGCCAGATTTGCAGAAGGGGATACTTCCTGAAATATTAGAAGAACTATTGACTGCTCGGAAAAGAGCAAAGGCAGATTTGAAGGAAGCGAAGGATCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGCTAGCTCTGAAGATAAGTGCAAATTCTGTGTATGGGTTTACAGGAGCTACTGTTGGTCAGTTGCCATGTATAGAGATATCATCAAGTGTTACAAGCTATGGTCGACAAATGATTGAACACACAAAGAAGCTTGTGGAAGATAAATTTACAACGCTTGGGGGATATGAGCACAATGCTGAGGTAATCTATGGTGATACAGATTCTGTTATGGTACAATTTGGTGTTCCCAGTGTAGAAGCAGCAATGATCTTGGGAAGGGAAGCAGCTGACTATATCAGTGGTACTTTCATAAAACCTATCAAGTTAGAGTTTGAGAAGGTATATTATCCATATCTGTTGATTAGTAAGAAGAGATACGCTGGTTTATTTTGGACTAATCCAAATAAGTTTGACAAGATGGATACCAAAGGCATTGAAACAGTTCGAAGAGATAATTGCTTATTGGTGAAAAACCTTGTAAATGAGTGCTTGCACAAAATTCTTATCGATAGAGATGTCCCTGGGGCAGTTCAATATGTGAAGAACACAATTTCAGATCTGCTTATGAACCGTGTGGATTTATCACTCTTGGTTATCACCAAGGGACTAACAAAAACTGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGTAAGCGAGATGCTGCCACAGCTCCAAATGTTGGCGATCGAGTACCTTATGTGATCATTAAAGCAGCCAAAGGCGCCAAGGCATATGAGAGGTCAGAGGATCCCATTTATGTTCTAGAGAATAGCATACCAATAGATCCTCAGTACTATCTTGAGAATCAGATTAGCAAGCCTCTTCTACGAATTTTCGAGCCCATCTTGAAAAACGCTAGCAAGGAACTTCTACATGGAAGTCACACGAGATCAATTTTTATTTCTACTCCATCAAACGGTGGCATAATGAAATTTGCTAAGAAACAGCTAACCTGCATTGGCTGCAAGGCTCTACTAAGCAAGGCGGACAAAACTCTCTGCTCACACTGCAAAGGAAGAGAAGCGGAACTTTACTGCAAAGCAGTTGCAAATGTGTCTGATTTGGAGATGGTTTTTGGGAGGCTTTGGACACAGTGCCAAGAATGCCAAGGGTCTCTTCACCAAGATGTCCTCTGTACGAGTCGAGACTGTCCAATATTTTATCGTAGAAAGAAGGCACAAAAAGACATGGCTGAAGCTAAACAGCATTTGGAACGTTGGAGTTTCTAG 3261 42.69 MNNGSARKSRPPPQHPSPAPPTKHQALSQEEDFVDEDVFLDENLLDEDALILRDMEERQALASRLSKWARPPLSQEYLSQSKSIVFQQLEIDYVIGESHRELLPNLSGPAAILRIFGVTREGHSVCCHVHGFEPYFYISCPPGMGPDDISLFHRTLEARMKEVNRNSKAPNFVRRIELVQKRSIMYYQQQTSQPFLKIVVALPTMVTSCRGILDRGIQIDGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRNLSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQVANLVTLQGENQPFIRNVMTLNSCSPIAGVDVLSFDTEREVLLAWRDLIREADPDIIIGYNICKFDLPYLIERAEALKIPEFPILGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQAMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKHAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNLPPEHFNKTPSGEIFVKPDLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMILGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENSIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNGGIMKFAKKQLTCIGCKALLSKADKTLCSHCKGREAELYCKAVANVSDLEMVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKQHLERWSF 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31543331 31561256 - CePI673135_04g011990.1 Cec04g1199 200681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1199 1086 SUPERFAMILY DNA/RNA polymerases 551 961 IPR043502 -
Cec04g1199 1086 ProSitePatterns DNA polymerase family B signature. 740 748 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Cec04g1199 1086 MobiDBLite consensus disorder prediction 1 31 - -
Cec04g1199 1086 CDD POLBc_delta 567 960 - -
Cec04g1199 1086 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 66 1062 IPR050240 GO:0003887(PANTHER)|GO:0006261(PANTHER)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008296(PANTHER)|GO:0043625(PANTHER)|GO:0045004(PANTHER)
Cec04g1199 1086 Gene3D - 294 512 IPR036397 GO:0003676(InterPro)
Cec04g1199 1086 FunFam DNA polymerase 814 970 - -
Cec04g1199 1086 FunFam DNA polymerase 641 693 - -
Cec04g1199 1086 FunFam DNA polymerase 90 265 - -
Cec04g1199 1086 Gene3D Helix hairpin bin 641 693 - -
Cec04g1199 1086 SUPERFAMILY Ribonuclease H-like 110 532 IPR012337 -
Cec04g1199 1086 Gene3D DNA Polymerase, chain B, domain 1 89 266 - -
Cec04g1199 1086 FunFam DNA polymerase 333 567 - -
Cec04g1199 1086 Gene3D Palm domain of DNA polymerase 567 797 IPR023211 -
Cec04g1199 1086 SMART polmehr3 293 752 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cec04g1199 1086 NCBIfam DNA polymerase (pol2) 352 957 - -
Cec04g1199 1086 Pfam DNA polymerase family B 526 959 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Cec04g1199 1086 CDD DNA_polB_delta_exo 290 518 - -
Cec04g1199 1086 PRINTS DNA-directed DNA-polymerase family B signature 677 689 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cec04g1199 1086 PRINTS DNA-directed DNA-polymerase family B signature 738 746 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cec04g1199 1086 PRINTS DNA-directed DNA-polymerase family B signature 585 598 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cec04g1199 1086 Gene3D - 814 969 IPR042087 -
Cec04g1199 1086 Pfam C4-type zinc-finger of DNA polymerase delta 996 1067 IPR025687 -
Cec04g1199 1086 Pfam DNA polymerase family B, exonuclease domain 229 462 IPR006133 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1199 K02327 - - csv:101219332 2098.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1303 Cec-Chr2:29807425 Cec04g1199 Cec-Chr4:31543331 3.10E-49 dispersed
Cec02g1638 Cec-Chr2:33964632 Cec04g1199 Cec-Chr4:31543331 1.10E-89 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g0257 . 105 657 Core DNA Replication Machinery Family AT4G14700 65.9 2.0e-212 736.1
Cec08g0257 . 105 660 Core DNA Replication Machinery Family AT4G12620 67.7 9.8e-220 760.4
Cec08g1624 . 65 425 Core DNA Replication Machinery Family AT2G37560 64.8 5.6e-140 494.2
Cec07g0530 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.3 1.5e-150 529.6
Cec06g0376 . 3 531 Core DNA Replication Machinery Family AT4G29910 58.0 1.5e-171 599.7
Cec11g0910 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.1 6.5e-94 340.9
Cec09g2365 . 68 863 Core DNA Replication Machinery Family AT1G79150 58.8 1.0e-243 840.1
Cec10g1313 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1352.8
Cec04g2153 . 128 702 Core DNA Replication Machinery Family AT5G46280 81.0 8.0e-269 922.9
Cec02g0506 . 192 1036 Core DNA Replication Machinery Family AT2G16440 75.9 0.0e+00 1147.5
Cec11g0370 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1111.7
Cec04g2312 . 7 835 Core DNA Replication Machinery Family AT5G44635 71.6 0.0e+00 1173.3
Cec09g0509 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1220.3
Cec02g2065 . 55 512 Core DNA Replication Machinery Family AT2G29680 61.4 6.7e-158 554.3
Cec02g2065 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 1.5e-143 506.5
Cec09g0868 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 3.3e-257 884.4
Cec10g2063 . 12 783 Core DNA Replication Machinery Family AT3G09660 73.8 0.0e+00 1109.4
Cec09g1700 . 22 420 Core DNA Replication Machinery Family AT2G14050 85.2 4.6e-196 681.4
Cec09g1698 . 9 242 Core DNA Replication Machinery Family AT2G14050 67.9 1.7e-86 317.4
Cec02g1251 . 1926 2304 Core DNA Replication Machinery Family AT2G20980 56.2 6.5e-108 387.9
Cec09g0268 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Cec11g0642 . 5 188 Core DNA Replication Machinery Family AT1G19080 68.5 1.9e-70 262.3
Cec11g0642 . 5 188 Core DNA Replication Machinery Family AT3G55490 68.5 1.9e-70 262.3
Cec05g0169 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.1e-49 193.4
Cec02g1303 . 9 1536 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1744.6
Cec01g1709 . 118 740 Core DNA Replication Machinery Family AT1G67630 60.5 2.1e-214 742.3
Cec06g0212 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.0 2.9e-182 635.2
Cec08g0101 . 196 639 Core DNA Replication Machinery Family AT5G41880 65.0 2.2e-176 615.5
Cec04g1199 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.7
Cec10g1767 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.6 1.3e-205 712.6
Cec06g0212 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.0 2.9e-182 635.2
Cec01g0547 . 1 127 Core DNA Replication Machinery Family AT1G09815 61.5 4.9e-38 154.1
Cec02g2314 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.6 0.0e+00 2988.0
Cec09g2157 . 83 2096 Core DNA Replication Machinery Family AT1G08260 68.2 0.0e+00 2788.4
Cec02g2314 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.2 0.0e+00 2955.6
Cec09g2157 . 106 2203 Core DNA Replication Machinery Family AT2G27120 65.1 0.0e+00 2751.1
Cec01g1812 . 681 1116 Core DNA Replication Machinery Family AT5G22110 71.1 3.1e-184 641.7
Cec02g2368 . 74 998 Core DNA Replication Machinery Family AT5G22010 63.2 7.7e-306 1046.6
Cec10g0359 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.3 2.8e-173 604.7
Cec04g0586 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 4.1e-178 620.9
Cec11g1645 . 63 381 Core DNA Replication Machinery Family AT1G21690 81.6 1.6e-144 509.2
Cec08g0611 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.3 1.3e-155 546.2
Cec11g0165 . 26 607 Core DNA Replication Machinery Family AT2G06510 67.7 3.0e-245 844.7
Cec10g0110 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.3 3.4e-196 681.8
Cec06g1758 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.9 1.8e-247 852.0
Cec10g0110 . 10 812 Core DNA Replication Machinery Family AT5G45400 50.3 5.1e-227 784.6
Cec06g1758 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.6 1.5e-239 825.9
Cec10g0110 . 5 798 Core DNA Replication Machinery Family AT4G19130 53.4 1.5e-225 779.6
Cec03g1851 . 1 568 Core DNA Replication Machinery Family AT5G26680 58.5 5.8e-168 587.4
Cec05g0315 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.5 3.3e-300 1028.1
Cec07g1686 . 1 282 Core DNA Replication Machinery Family AT2G25100 66.7 7.7e-108 387.1
Cec02g2268 . 2 762 Core DNA Replication Machinery Family AT1G08130 69.2 8.7e-298 1019.6
Cec02g2268 . 162 762 Core DNA Replication Machinery Family AT1G49250 69.1 3.3e-242 834.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011899 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30