Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1218 ATGAGTTCGTTGAGGTGTCAAAAAGAGAGTTGGGTAAAGCAAACGCCACGTTGTAGATTGCAAAGTTCCGGCTCCTCCACCTCACCGCCTCCTCCGATAATTGGCGCGCAGTGTATCTGGCTATTCATTTCGGTTACTGATCAGTTCTCTCTAATGGAGTTTCGCATTCTGCAACAATCTCCATCGTGTTATGCAGGAAATGTCTTTTGCTCGGTCCAGCCCCGTTTGGGAATTCGGAAGTTTCTTAGTTTGGTTTCCACGAACACAACGATTTTGCAGAAGATATGTTCCCGAAATTATCCTAGGAGAAAGACACAGTACCGTTCGGAAGTTAATAGAGCGGCTGTACTCTGTTCAACTAGTTTAAATGACAGTACATTGGCGCAATATGATAACGTAAAAATCATTTATTCTGTAGCTGCTGCCACGGGTCATAATCAGGAATCTCATCCAGAATCTCATCTCAGGGTTCCTGCAATAACGAATGCTCTTGAAGACATGGAACTCACACCTAAGTTTCAAGGCACAAATGTCATTGAACTTCAAAATTACAAACCTGCTTCAGTTGATGACATTGTGAGTGTTCATTCAAAGTCATACGTGGCAGGCCTTGAGATGGCTATGGATAGGGCTTCTCAAGATGGACTTATTTTAATTGAAGGCTCTGGACCGACATATGCCACTGCCACCACATTTAATGAATCACTAGTTGCAGCTGGAGCAGGAATTTCTTTAGTTGATTCAGTGGTCAAAGCGTCACAAACCTACATGAATCCGCCAATTGGTTTTGCATTGATAAGACCTCCAGGACATCATGCAGTCCCCAAGGGACCGATGGGATTCTGTGTATTTGGGAATGTAGCTATTGCAGCTCGTTATGCTCAACGTGTGCATGGATTGAAGCGTGTCTTTATTATTGATTTTGATGCTCACCATGGGAATGGAACGAGTGATGCATTCTATGACGATTCAGATATATTCTTCCTTTCAACTCACCAAGATGGAAGTTACCCTGGAACTGGTAAGATCGATGAAGTGGGTCGTGGAGACGGGGAAGGAACAACTCTAAATATTCCTCTACCGGGAGGCTCAGGTGATTATGCCATGAAAATGGTGTTTGACGAAGTTATTGTACCCTGTGCTCAAAGATTTAAGCCTGATATCATTCTTGTCTCTGCTGGGTATGATGCTCATGTATTAGATCCATTAGCCAATCTGCAATTCACGACTGGAACATACTACATGCTCGCATCCAATATTAAACAACTGGCAAAAGAATTATGCGAGGGACGATGTGTTTTTTTTCTGGAAGGAGGTTACAACCTCGAGTCTCTTTCGTATTCAGTGGCTGATTCGTTCCGCGCATTTCTTGACGAACCAAGCTTGGCGTCAGAGTTTGATAACCCTGCAATCTTGTATGAAGAACCATCAAGGAAATTTAAGCAAGTGATCCAGAAAGTGAAACAAATACATTCACTTTAA 1482 42.91 MSSLRCQKESWVKQTPRCRLQSSGSSTSPPPPIIGAQCIWLFISVTDQFSLMEFRILQQSPSCYAGNVFCSVQPRLGIRKFLSLVSTNTTILQKICSRNYPRRKTQYRSEVNRAAVLCSTSLNDSTLAQYDNVKIIYSVAAATGHNQESHPESHLRVPAITNALEDMELTPKFQGTNVIELQNYKPASVDDIVSVHSKSYVAGLEMAMDRASQDGLILIEGSGPTYATATTFNESLVAAGAGISLVDSVVKASQTYMNPPIGFALIRPPGHHAVPKGPMGFCVFGNVAIAARYAQRVHGLKRVFIIDFDAHHGNGTSDAFYDDSDIFFLSTHQDGSYPGTGKIDEVGRGDGEGTTLNIPLPGGSGDYAMKMVFDEVIVPCAQRFKPDIILVSAGYDAHVLDPLANLQFTTGTYYMLASNIKQLAKELCEGRCVFFLEGGYNLESLSYSVADSFRAFLDEPSLASEFDNPAILYEEPSRKFKQVIQKVKQIHSL 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31726236 31731748 - CePI673135_04g012180.1 Cec04g1218 200700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1218 493 CDD HDAC_classII 150 457 - -
Cec04g1218 493 SUPERFAMILY Arginase/deacetylase 136 489 IPR023696 -
Cec04g1218 493 Gene3D Histone deacetylase domain 119 492 IPR037138 -
Cec04g1218 493 PANTHER HISTONE DEACETYLASE HDAC1-RELATED 140 492 IPR050284 GO:0000118(PANTHER)|GO:0000122(PANTHER)|GO:0004407(PANTHER)|GO:0005737(PANTHER)|GO:0008134(PANTHER)|GO:0016575(PANTHER)
Cec04g1218 493 PRINTS Histone deacetylase superfamily signature 268 291 IPR000286 -
Cec04g1218 493 PRINTS Histone deacetylase superfamily signature 302 317 IPR000286 -
Cec04g1218 493 PRINTS Histone deacetylase superfamily signature 386 396 IPR000286 -
Cec04g1218 493 Pfam Histone deacetylase domain 150 454 IPR023801 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1218 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1301 Cec-Chr3:29078136 Cec04g1218 Cec-Chr4:31726236 3.40E-39 dispersed
Cec04g1218 Cec-Chr4:31726236 Cec06g1766 Cec-Chr6:31182519 6.70E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1318 . . . Bda10g00405 . . . Bma15g00779 . . Cma03g01104 . Car03g00993 . Sed11g1186 . Cpe10g00327 Bhi03g01333 Tan03g1296 Cmetu08g1459 . Hepe04g1102 . . Cla01g01506 Cam01g1574 Cec04g1218 Cco04g1286 Clacu01g1599 Cmu01g1487 . . . . . Lsi01g01162 . . Cme08g01094 . Blo06g00188 . . Bpe10g00264 . . . . Cmo03g01087 . . . . . . . . . . . . . . . . . . . . . . Csa06g02770 Chy02g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007674 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 32