Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1224 ATGCCTCTTGGTTGGGTAAAAAAATTGAGTAGAAACAAGGACCATCACAATCACCCCACTTCCTCTCTTAACCTCTTCAAGTCTTCTTCCCCCAAAACTCAACCTAAGAACCCCACCCACAAACCCAAGAGCTTCGATGAGGTTTCTGCTGTGAGTTTCTCACGCAATTCCCCGAGGTCCAGCAGGGATCTGGGCTCTTCTGGCGCTGCCTCTTCTGGGTTTTCCGGTTTTGACTCCGATAGTGGGGATAAAAGTCTTCCTCTTCCTCGACCTGCTATTTCCGGCCTTGGGATTGATCATGGACCCGGGAATGGATCTGGGTCGAGTTCGGTCTCCAGTATTAGTTCTTCCGGGTCTTCGGATGATCATCCATCTGCTCAAGAACAGCTTCACTTTGGAGCTTACAGAGGATTTGTCGATACGAGAATCGAGACAAGGCTGAGAAGTCCAGGTCCAGGATCAAAAGGACCCACCAGTCCTACATCACCTCTCAATCCAAGGCTCTGTGGCATGAGTCTGGAGTCTCCTACAACTCATAAGCTGCCGCTTCCTCCAAGTCCTTCTTCCTTGAGCAGCACGAGAGCTATCAATATCGGCGATAATAATGCAGCTATACAATCAAAGTGGAAGAAAGGAAGGCTTCTAGGAAGGGGAACATTTGGGCATGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATTAAGGAGGTCAGGGTTATAAGTGATGACTCAACATCAAAGGAATGTCTCAAGCAATTGAACCAGGAGATTACTCTGCTCAGTCAGCTGTCACATCCGAACATTGTACGGTACTATGGTAGTGAAATGGGTGATGAGTCGCTCTCAGTCTACTTAGAATACATCTCCGGTGGCTCAATTCACAAATTACTTCAGGAATATGGCGCCTTCAAAGAACCTGTTATAAGAAATTATACCCGAAAGATTCTTTCCGGGCTTGCTTATCTGCATGGGAGAAATACAGTGCACAGGGACATAAAAGGGGCAAATATCTTAGTAGATCCGAAAGGCGAGGTCAAGTTGGCGGACTTTGGCATGGCAAAACATATAACGAATTGTACTTCGATGCTTTCCTTTAAAGGCAGTCCTTATTGGATGGCCCCTGAGGTTGTGATGAATACAAATGGCTACAGTCTTGCTGTAGACATTTGGAGTTTAGGATGTACGGTTCTTGAAATGGCAACGTCTAAACCGCCTTGGAGCAAATACGAAGGGGTTGCTGCCATTTTCAAAATTGGGAATAGTAGAGACATTCCTGAAATTCCAGACCATCTCTCCCATGATGCTAAAAATTTTGTGCTATTATGTTTGCAACGGGATCCATCTGCACGTCCTTCTGCTGCAGACCTACTGGATCACCCTTTTGTTCAAGATGCAGTAACACCAAGAGCATCTGATGTTAACTTCTCCACGGATGCGTTCCTCTTTAGCATCGATGGAATCCAGACTCCGCCATTGTTAGATCGGCATCCAAACAGAAAAAGTATAAGCATATGCGATGGAGATTATGTGACAAACCCAACATTCTCTTCCAGAGCTCCGAGGAGTTCTAGGGGAAATGGAAGATTCACATCCTTGCCCGGCTCTCCATGTTCGAGTCCAATAACCGGACACCAGAGCTATTATCTTTCACCACCTCACTCATCTCACATGGGGATGAGTCAAAGCGGATACAATTTGAATGAATACACGTATAACACGAGACCGAACACATTGTTCACCCTTGATCCTTTGCGAGATTCATCGCTATTGAAAGTGCAGACTCATCTTGGATCACCAAGAAGAACTCTTTGA 1821 45.69 MPLGWVKKLSRNKDHHNHPTSSLNLFKSSSPKTQPKNPTHKPKSFDEVSAVSFSRNSPRSSRDLGSSGAASSGFSGFDSDSGDKSLPLPRPAISGLGIDHGPGNGSGSSSVSSISSSGSSDDHPSAQEQLHFGAYRGFVDTRIETRLRSPGPGSKGPTSPTSPLNPRLCGMSLESPTTHKLPLPPSPSSLSSTRAINIGDNNAAIQSKWKKGRLLGRGTFGHVYLGFNSVSGQMCAIKEVRVISDDSTSKECLKQLNQEITLLSQLSHPNIVRYYGSEMGDESLSVYLEYISGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPKGEVKLADFGMAKHITNCTSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTVLEMATSKPPWSKYEGVAAIFKIGNSRDIPEIPDHLSHDAKNFVLLCLQRDPSARPSAADLLDHPFVQDAVTPRASDVNFSTDAFLFSIDGIQTPPLLDRHPNRKSISICDGDYVTNPTFSSRAPRSSRGNGRFTSLPGSPCSSPITGHQSYYLSPPHSSHMGMSQSGYNLNEYTYNTRPNTLFTLDPLRDSSLLKVQTHLGSPRRTL 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31766434 31770505 - CePI673135_04g012240.1 Cec04g1224 200706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1224 606 SMART serkin_6 209 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1224 606 MobiDBLite consensus disorder prediction 518 540 - -
Cec04g1224 606 SUPERFAMILY Protein kinase-like (PK-like) 207 551 IPR011009 -
Cec04g1224 606 MobiDBLite consensus disorder prediction 21 38 - -
Cec04g1224 606 MobiDBLite consensus disorder prediction 49 79 - -
Cec04g1224 606 CDD STKc_MEKK1_plant 208 465 - -
Cec04g1224 606 FunFam Mitogen-activated protein kinase kinase kinase 207 488 - -
Cec04g1224 606 Gene3D Transferase(Phosphotransferase) domain 1 205 482 - -
Cec04g1224 606 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 27 472 IPR050538 -
Cec04g1224 606 MobiDBLite consensus disorder prediction 1 126 - -
Cec04g1224 606 MobiDBLite consensus disorder prediction 146 190 - -
Cec04g1224 606 MobiDBLite consensus disorder prediction 103 126 - -
Cec04g1224 606 ProSiteProfiles Protein kinase domain profile. 209 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1224 606 MobiDBLite consensus disorder prediction 152 172 - -
Cec04g1224 606 Pfam Protein kinase domain 210 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1224 606 ProSitePatterns Protein kinases ATP-binding region signature. 215 238 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1225 Cec-Chr1:19916892 Cec04g1224 Cec-Chr4:31766434 8.40E-17 dispersed
Cec03g0914 Cec-Chr3:12074021 Cec04g1224 Cec-Chr4:31766434 7.10E-60 dispersed
Cec04g1224 Cec-Chr4:31766434 Cec05g0983 Cec-Chr5:8598472 1.40E-117 dispersed
Cec04g1224 Cec-Chr4:31766434 Cec01g0458 Cec-Chr1:4732728 4.60E-121 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71914 PF00069 Pkinase 1.40E-71 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1224 K04421 - csv:101203907 1001.89