Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1234 ATGGACCCCCATCACCTCCCAAACCCCTCTTCTCATCTCCATCACTCAGCCATGGAAGACCACCATATCGACCTTCACCATCATCACCACGCCCCCGACCTCGATTCCATTTGGCCGTCGTTGTTGCCATTCCAACTCCCCGACTCTCACGATCAACAACTCCCCTCCTCTTCCACCCATCTGTTGATAGGCTACGGTACTCCGAGTTCTGGAACAGGTGATGATGAAGAAGAACCGGAAGAAGAGTTAGGTGCTATGAAGGAGATGATGTATAAGATTGCGGCAATGCAGCCAGTGGACATCGACCCTTCAACTATCCGAAAGCCTAAGCGACGAAACGTGCGGATTAGTGATGACCCGCAAAGCATCGCAGCTCGTCTCCGACGGGAGAGGATCAGTGAGAAAATCAGAATTCTTCAAAGGCTTGTACCTGGAGGGACCAAGATGGACACAGCTTCAATGTTGGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATTCGGTTGCTGCAGTCAAGTCAGCCGCCGCAACAGCCAACCACCAGCGGTGGAGCCGCCGCTGCCGGCGGAGGATGGCCTTTTCCTTTCCATAAGGCTAATGGTTCAACCTCCTCATCCACTTCCATGGAGACTACTCCTGCCATTACACCATCAGGATGGAAAGTTTGTTTGGCCGACTCTTCTTCCTGGAATTTACACTGA 708 51.69 MDPHHLPNPSSHLHHSAMEDHHIDLHHHHHAPDLDSIWPSLLPFQLPDSHDQQLPSSSTHLLIGYGTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPPQQPTTSGGAAAAGGGWPFPFHKANGSTSSSTSMETTPAITPSGWKVCLADSSSWNLH 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31887456 31888801 - CePI673135_04g012340.1 Cec04g1234 200716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1234 235 MobiDBLite consensus disorder prediction 48 66 - -
Cec04g1234 235 Gene3D - 119 182 IPR036638 GO:0046983(InterPro)
Cec04g1234 235 FunFam BHLH transcription factor 119 183 - -
Cec04g1234 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 175 IPR036638 GO:0046983(InterPro)
Cec04g1234 235 MobiDBLite consensus disorder prediction 200 216 - -
Cec04g1234 235 Pfam Helix-loop-helix DNA-binding domain 125 166 IPR011598 GO:0046983(InterPro)
Cec04g1234 235 SMART finulus 122 171 IPR011598 GO:0046983(InterPro)
Cec04g1234 235 MobiDBLite consensus disorder prediction 174 216 - -
Cec04g1234 235 CDD bHLH_AtIND_like 117 174 - -
Cec04g1234 235 MobiDBLite consensus disorder prediction 48 81 - -
Cec04g1234 235 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 8 208 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1234 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 165 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0840 Cec-Chr3:10172016 Cec04g1234 Cec-Chr4:31887456 3.00E-09 dispersed
Cec04g1234 Cec-Chr4:31887456 Cec05g2218 Cec-Chr5:33719264 2.40E-33 dispersed
Cec04g1234 Cec-Chr4:31887456 Cec08g1655 Cec-Chr8:27890832 1.30E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29337 PF00010 HLH 1.50E-06 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1234 - - - 0.0