Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g1234 | ATGGACCCCCATCACCTCCCAAACCCCTCTTCTCATCTCCATCACTCAGCCATGGAAGACCACCATATCGACCTTCACCATCATCACCACGCCCCCGACCTCGATTCCATTTGGCCGTCGTTGTTGCCATTCCAACTCCCCGACTCTCACGATCAACAACTCCCCTCCTCTTCCACCCATCTGTTGATAGGCTACGGTACTCCGAGTTCTGGAACAGGTGATGATGAAGAAGAACCGGAAGAAGAGTTAGGTGCTATGAAGGAGATGATGTATAAGATTGCGGCAATGCAGCCAGTGGACATCGACCCTTCAACTATCCGAAAGCCTAAGCGACGAAACGTGCGGATTAGTGATGACCCGCAAAGCATCGCAGCTCGTCTCCGACGGGAGAGGATCAGTGAGAAAATCAGAATTCTTCAAAGGCTTGTACCTGGAGGGACCAAGATGGACACAGCTTCAATGTTGGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATTCGGTTGCTGCAGTCAAGTCAGCCGCCGCAACAGCCAACCACCAGCGGTGGAGCCGCCGCTGCCGGCGGAGGATGGCCTTTTCCTTTCCATAAGGCTAATGGTTCAACCTCCTCATCCACTTCCATGGAGACTACTCCTGCCATTACACCATCAGGATGGAAAGTTTGTTTGGCCGACTCTTCTTCCTGGAATTTACACTGA | 708 | 51.69 | MDPHHLPNPSSHLHHSAMEDHHIDLHHHHHAPDLDSIWPSLLPFQLPDSHDQQLPSSSTHLLIGYGTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPPQQPTTSGGAAAAGGGWPFPFHKANGSTSSSTSMETTPAITPSGWKVCLADSSSWNLH | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 31887456 | 31888801 | - | CePI673135_04g012340.1 | Cec04g1234 | 200716 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g1234 | 235 | MobiDBLite | consensus disorder prediction | 48 | 66 | - | - | |
Cec04g1234 | 235 | Gene3D | - | 119 | 182 | IPR036638 | GO:0046983(InterPro) | |
Cec04g1234 | 235 | FunFam | BHLH transcription factor | 119 | 183 | - | - | |
Cec04g1234 | 235 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 121 | 175 | IPR036638 | GO:0046983(InterPro) | |
Cec04g1234 | 235 | MobiDBLite | consensus disorder prediction | 200 | 216 | - | - | |
Cec04g1234 | 235 | Pfam | Helix-loop-helix DNA-binding domain | 125 | 166 | IPR011598 | GO:0046983(InterPro) | |
Cec04g1234 | 235 | SMART | finulus | 122 | 171 | IPR011598 | GO:0046983(InterPro) | |
Cec04g1234 | 235 | MobiDBLite | consensus disorder prediction | 174 | 216 | - | - | |
Cec04g1234 | 235 | CDD | bHLH_AtIND_like | 117 | 174 | - | - | |
Cec04g1234 | 235 | MobiDBLite | consensus disorder prediction | 48 | 81 | - | - | |
Cec04g1234 | 235 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 8 | 208 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1234 | 235 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 116 | 165 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec03g0840 | Cec-Chr3:10172016 | Cec04g1234 | Cec-Chr4:31887456 | 3.00E-09 | dispersed | |
Cec04g1234 | Cec-Chr4:31887456 | Cec05g2218 | Cec-Chr5:33719264 | 2.40E-33 | dispersed | |
Cec04g1234 | Cec-Chr4:31887456 | Cec08g1655 | Cec-Chr8:27890832 | 1.30E-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29337 | PF00010 | HLH | 1.50E-06 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g1234 | - | - | - | 0.0 |