Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1242 ATGGTGAGAGATGACTTATGTATTACAATTCCGAGCGATTTCAGATGTCCGATATCGCTAGACGTGATGAAATCCCCTGTGAGTTTATGTACCGGAGTGACTTACGACCGTTCCAGTATCCAGAAATGGCTTGATAATGGAAACAACACTTGTCCGGCCACCATGCAGGTCCTTCAAACCAAGGAGTTCGTTCCCAATCACAATCTCCACCGCCTCATTCAGATTTGGTCCGATTCCCTTCACCAACGACTCCACTCCCCTGTTTCCGACTCTGCTCTCTCCTCCGATCAAGTTCTCCGCCTCGTCAACCGTATGGAAGACGATCAATCACGCGCTGATTCTCTTCCGCGGCTTGTCTCTTTCGCTTCCGAATCGGTGGAGAATCGGAGGCTTCTCTGCGGAATTGACGGACTCTTGCCGGTACTCGTCGATCTTCTTGGCAATGTCGATGGCGGCGTTTTGGTTGAGCAGACGGTGAGGTTGTTGCATTTGATTCGGAGTGAAATAGAGGATAAGGAGCGGTTTGTGAAGACGATGTTGAAGATGGATCGTAATTGTATTTCGTCTCTGCTTCTGATTCTGCGGAAAGGTACCGTCGAATTGAAAATCTGTTCTGCTAATCTGTTGGAGTATCTCGCCATCGATGCGGAAGCGAAGATTAGAATTGCCGAAACGGATGGATTGATGCAAGAATTACTGAAATTAATCAATTCAGAGAACGATACAACCCTGATCGAATCCGTTCTATCATGCCTAATTTCAATTTCAATGCCGAAACGGATCAAAATCAAATTAGTTCAGCTGGGAGTGATAAAATCGGTAACGAAGCTTCTCTCGGAATCGAACTCGAGTTCAAGCATTTCGATGACGGAGAAGGTTCTAAAAGTACTGGAAATGGCATCGACGGTGAGAGAAGGGAGGACAGAGATCGGAGAGGACTCGGTGTGCGTGGCGGCGATAGTACAGAAGGTGCTGAAGGTATCGAACACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTTTGTTATCTGTTCAGAGACGAGAAGGCGGCGGAAGCGTTGACGAAGGCGAACGGATTGACGAAGATTTTGCTGTTAATGCAGAGCAATTGTTCGGCGCCTGTGAGGCAGATGGCGAGAGATCTGTTGAAGATTTTTCGGATCAATTCAAAATCGTGCCTATCGAGTTACGATACAAAAACTACGCATATCATGCCCTGTTAA 1227 47.76 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKEFVPNHNLHRLIQIWSDSLHQRLHSPVSDSALSSDQVLRLVNRMEDDQSRADSLPRLVSFASESVENRRLLCGIDGLLPVLVDLLGNVDGGVLVEQTVRLLHLIRSEIEDKERFVKTMLKMDRNCISSLLLILRKGTVELKICSANLLEYLAIDAEAKIRIAETDGLMQELLKLINSENDTTLIESVLSCLISISMPKRIKIKLVQLGVIKSVTKLLSESNSSSSISMTEKVLKVLEMASTVREGRTEIGEDSVCVAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSAPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31977467 31978693 - CePI673135_04g012420.1 Cec04g1242 200724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1242 408 SUPERFAMILY RING/U-box 6 78 - -
Cec04g1242 408 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Cec04g1242 408 CDD RING-Ubox_PUB 11 63 IPR045210 -
Cec04g1242 408 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec04g1242 408 PANTHER WDSAM1 PROTEIN 7 407 IPR045185 GO:0061630(InterPro)
Cec04g1242 408 Gene3D - 81 400 IPR011989 -
Cec04g1242 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 80 IPR013083 -
Cec04g1242 408 SMART Ubox_2 13 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec04g1242 408 SUPERFAMILY ARM repeat 162 394 IPR016024 -
Cec04g1242 408 Pfam U-box domain 10 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1242 Cec-Chr4:31977467 Cec07g0613 Cec-Chr7:8245350 2.70E-32 dispersed
Cec02g0048 Cec-Chr2:481653 Cec04g1242 Cec-Chr4:31977467 9.50E-35 transposed
Cec05g2899 Cec-Chr5:39103859 Cec04g1242 Cec-Chr4:31977467 1.20E-28 transposed
Cec08g1724 Cec-Chr8:28355322 Cec04g1242 Cec-Chr4:31977467 2.20E-35 transposed
Cec02g0070 Cec-Chr2:644687 Cec04g1242 Cec-Chr4:31977467 3.30E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1242 - - - 0.0