Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1250 ATGGCCGATGCCGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCTAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCTTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCTCCCGAAGAGCACCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGGGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCTATGTATGTTGCCATCCAGGCCGTTCTGTCCCTCTATGCTAGTGGGCGTACCACTGGTATCGTGCTGGATTCTGGTGATGGGGTGAGTCACACTGTTCCCATCTACGAGGGTTACGCCCTCCCTCATGCCATTCTCCGTTTGGACCTTGCTGGTCGCGACCTTACTGATGCTCTCATGAAGATTCTCACTGAAAGAGGTTACATGTTCACCACCACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTTGAGACAGCCAAGAGCAGTTCCTCCATTGAGAAAAACTACGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATCGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTAGATATCAGAAAGGACCTGTATGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATCACAGCCCTTGCTCCTAGCAGCATGAAGATTAAGGTCGTTGCGCCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGTACCTTCCAGCAGGAAGTGCTTCTAAGCTCTGTCTATTTCCTTGATGACGATGGTGATGATGATGATGAACCTCCTCTGATTGCTGCCATTATAGTACAAATCACTTATTCTGGGATGAGTATTTTGGCAAAAGCTGCTTTTGCATCTGGTATGAACAATTTTATTTTCATTTTCTACAGGCAAGCTTTTGGAACTCTCTCCCTAATCCCTCCTACCATTATTTTCAAAAGGCATTGGTTTTTGAAGACTTGCCCATCTCCACTGGTGTTAACGTGTGGACAAACGTTGGCAAGCACCTTCCAGACATTTGTTGTGGCCATTGCAGTTAGAAACAAATCTTTCACAATCGAAGTTCGTCTCCTTGCTGTTCTTTACTGTGGAATTTTTGTGATTTTGATTGGGAAGTATTTGGGATGTTGGGTCATCAAGAAGAAGGGTCCTGTTTTTCTAGCTGCTACAACTCCATTGAATCTCATTGCTACTATCCTTGGTTCACAATTTTTACTGACTGATGGAACCAGCTTGGGAAGGATCAAAGAAATGGATTCAAAGAAGCCTTACTTTGCTGCTATTGTTTCCCAAATCACTTTTGCTGGGATGAGTCTATTCTCAAAGGCAGCCTTTGCTTCTGGTATGAATACTTATATTTTCCTTTTCTACAGGCAAACTGTTGGGACTCTCTTCTTACTGCCCCCCACCATTTATTTCAAAAGAAAGGAAATGGCATGTTTATCAGTAGGAGATTTGTGGAAGATTTTCATGCAGGCCATTTTGGGGTTCACATTGGGTTTGAATGCTTATGGGTTAGGAGTTAAGTATACATCAGCAACTTTGGGTGCTGCAGCCTTTAATTGTGTTCCTGTCACCACATTCTTCTTTGCTCTTATTTCAAGGATGGAGAAAGTAAACATAAGGAAAGCAAGTGGAATGGCAAAGATTGGAGGCATAATGTTGTGCATTGCAGGGGTTGCAGTTCTTGCATTTTACAAAGGCCCTTATTTCAAACCACTCTTCAATTTTCACCTTTTTCAAATCCATCAATCTCATGTTTCTTCCCAAAAAACATGGATTCTTGGTTGCTTTTTGCTCCTTGTTTCTTCCCTTTCATGGGGTTTGTGGTTTGTCCTTCAGGCTTGGGTTTTAAAGACTTGCCCATCTCCACTTGTGTTAACATTTGGACAGACATTTTCAAGTGCCATTCAATCTTTCGTTGTGGCTATTGCAATAGAAAGAAATCCTTCTCAATGGAAATTGGCTTGGAATATTCGTCTCTTTGCTGTTCTTTATTGTGGAATTTTTGCAATGTGTGTTGCAAACTATTTGTCAAGTTGGGTGATAAAAAAGAAGGGTCCAGTTTTCCAAGCTGTTTCCACACCCTTCAATCTCATTTTCACACTCATTGGTTCAGAATTTCTTTTAAATGATGGAGTTAGCTTGGGAAGTATAATAGGTGGCATGTTGCTGGTTTTGAGCCTTTATAGTGTTTTATGGGGAAAAAAGAAGGAAATGAATTGTCACGATACAGAAAATTACAAGACTGATTCTGTTCCACTGGAAAAAGAAATGTTAGATCACATTTGA 2637 42.78 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQEVLLSSVYFLDDDGDDDDEPPLIAAIIVQITYSGMSILAKAAFASGMNNFIFIFYRQAFGTLSLIPPTIIFKRHWFLKTCPSPLVLTCGQTLASTFQTFVVAIAVRNKSFTIEVRLLAVLYCGIFVILIGKYLGCWVIKKKGPVFLAATTPLNLIATILGSQFLLTDGTSLGRIKEMDSKKPYFAAIVSQITFAGMSLFSKAAFASGMNTYIFLFYRQTVGTLFLLPPTIYFKRKEMACLSVGDLWKIFMQAILGFTLGLNAYGLGVKYTSATLGAAAFNCVPVTTFFFALISRMEKVNIRKASGMAKIGGIMLCIAGVAVLAFYKGPYFKPLFNFHLFQIHQSHVSSQKTWILGCFLLLVSSLSWGLWFVLQAWVLKTCPSPLVLTFGQTFSSAIQSFVVAIAIERNPSQWKLAWNIRLFAVLYCGIFAMCVANYLSSWVIKKKGPVFQAVSTPFNLIFTLIGSEFLLNDGVSLGSIIGGMLLVLSLYSVLWGKKKEMNCHDTENYKTDSVPLEKEMLDHI 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32084613 32095742 + CePI673135_04g012500.1 Cec04g1250 200732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1250 878 PANTHER ACTIN 8 357 IPR004000 -
Cec04g1250 878 FunFam Major actin 261 340 - -
Cec04g1250 878 FunFam Actin, alpha skeletal muscle 3 158 - -
Cec04g1250 878 SUPERFAMILY Multidrug resistance efflux transporter EmrE 572 682 - -
Cec04g1250 878 PRINTS Actin signature 238 254 IPR004000 -
Cec04g1250 878 PRINTS Actin signature 51 62 IPR004000 -
Cec04g1250 878 PRINTS Actin signature 117 130 IPR004000 -
Cec04g1250 878 PRINTS Actin signature 63 85 IPR004000 -
Cec04g1250 878 PRINTS Actin signature 28 37 IPR004000 -
Cec04g1250 878 PRINTS Actin signature 142 161 IPR004000 -
Cec04g1250 878 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cec04g1250 878 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cec04g1250 878 FunFam Actin, muscle 182 273 - -
Cec04g1250 878 SMART actin_3 7 365 IPR004000 -
Cec04g1250 878 Gene3D - 10 360 - -
Cec04g1250 878 Pfam Actin 5 359 IPR004000 -
Cec04g1250 878 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cec04g1250 878 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cec04g1250 878 SUPERFAMILY Actin-like ATPase domain 149 359 IPR043129 -
Cec04g1250 878 Gene3D Actin; Chain A, domain 4 182 273 - -
Cec04g1250 878 Gene3D - 140 340 - -
Cec04g1250 878 SUPERFAMILY Multidrug resistance efflux transporter EmrE 770 853 - -
Cec04g1250 878 Pfam EamA-like transporter family 710 848 IPR000620 GO:0016020(InterPro)
Cec04g1250 878 Pfam EamA-like transporter family 538 677 IPR000620 GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1250 K10355 - - csv:101215469 711.835
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1250 Cec-Chr4:32084613 Cec10g1770 Cec-Chr10:32419855 4.50E-202 dispersed
Cec04g1250 Cec-Chr4:32084613 Cec04g1253 Cec-Chr4:32114319 3.00E-113 proximal
Cec08g0728 Cec-Chr8:19001705 Cec04g1250 Cec-Chr4:32084613 1.20E-65 transposed
Cec02g0081 Cec-Chr2:753254 Cec04g1250 Cec-Chr4:32084613 1.00E-46 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT2G37620 96.8 7.5e-215 743.0
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.7e-214 740.7
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 738.4
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.7e-212 734.6
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT2G37620 97.2 4.1e-205 710.7
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT2G37620 95.6 3.9e-203 704.1
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.2e-200 693.7
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 4.9e-214 740.3
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT5G59370 97.1 6.4e-214 740.0
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 8.6e-211 729.6
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT5G59370 96.9 3.9e-203 704.1
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT5G59370 94.4 5.2e-200 693.7
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT5G59370 94.7 7.1e-197 683.3
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.2e-214 741.5
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.4e-214 740.0
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT3G46520 97.2 1.7e-203 705.3
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT3G46520 94.7 2.4e-200 694.9
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.2e-197 684.5
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.4e-215 743.8
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.1e-213 737.3
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT3G12110 96.9 2.1e-204 708.4
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT3G12110 95.6 1.5e-202 702.2
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT3G12110 95.8 2.0e-199 691.8
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 6.2e-209 723.4
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.3e-208 721.5
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 8.9e-208 719.5
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT3G18780 93.6 2.0e-199 691.8
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT3G18780 93.1 3.4e-199 691.0
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.6e-196 680.6
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 2.1e-209 724.9
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT1G49240 92.6 6.2e-209 723.4
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.1e-209 723.0
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT1G49240 93.6 2.0e-199 691.8
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT1G49240 93.1 3.4e-199 691.0
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.6e-196 682.2
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT5G09810 96.6 6.4e-214 740.0
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 7.8e-212 733.0
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-206 715.7
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT5G09810 96.7 1.0e-203 706.1
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT5G09810 98.6 3.0e-203 704.5
Cec11g0212 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.6e-57 216.5
Cec09g0023 . 241 371 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Cec07g1455 . 532 662 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cec11g1559 . 305 435 Cytoskeleton Gene Families AT2G19760 72.5 4.4e-53 204.1
Cec11g0213 . 1 117 Cytoskeleton Gene Families AT2G19760 76.9 7.8e-50 193.4
Cec11g0212 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cec09g0023 . 241 371 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cec07g1455 . 532 662 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cec11g1559 . 305 435 Cytoskeleton Gene Families AT4G29350 70.2 9.2e-51 196.4
Cec11g0213 . 1 117 Cytoskeleton Gene Families AT4G29350 76.9 1.1e-48 189.5
Cec11g0213 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.6e-38 153.7
Cec11g0212 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cec09g0023 . 241 371 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Cec11g1559 . 305 435 Cytoskeleton Gene Families AT4G29340 72.4 1.5e-53 205.7
Cec07g1455 . 532 662 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Cec11g0213 . 1 117 Cytoskeleton Gene Families AT4G29340 65.8 2.9e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276