Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1250 ATGGCCGATGCCGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCTAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCTTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCTCCCGAAGAGCACCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGGGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCTATGTATGTTGCCATCCAGGCCGTTCTGTCCCTCTATGCTAGTGGGCGTACCACTGGTATCGTGCTGGATTCTGGTGATGGGGTGAGTCACACTGTTCCCATCTACGAGGGTTACGCCCTCCCTCATGCCATTCTCCGTTTGGACCTTGCTGGTCGCGACCTTACTGATGCTCTCATGAAGATTCTCACTGAAAGAGGTTACATGTTCACCACCACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTTGAGACAGCCAAGAGCAGTTCCTCCATTGAGAAAAACTACGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATCGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTAGATATCAGAAAGGACCTGTATGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATCACAGCCCTTGCTCCTAGCAGCATGAAGATTAAGGTCGTTGCGCCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGTACCTTCCAGCAGGAAGTGCTTCTAAGCTCTGTCTATTTCCTTGATGACGATGGTGATGATGATGATGAACCTCCTCTGATTGCTGCCATTATAGTACAAATCACTTATTCTGGGATGAGTATTTTGGCAAAAGCTGCTTTTGCATCTGGTATGAACAATTTTATTTTCATTTTCTACAGGCAAGCTTTTGGAACTCTCTCCCTAATCCCTCCTACCATTATTTTCAAAAGGCATTGGTTTTTGAAGACTTGCCCATCTCCACTGGTGTTAACGTGTGGACAAACGTTGGCAAGCACCTTCCAGACATTTGTTGTGGCCATTGCAGTTAGAAACAAATCTTTCACAATCGAAGTTCGTCTCCTTGCTGTTCTTTACTGTGGAATTTTTGTGATTTTGATTGGGAAGTATTTGGGATGTTGGGTCATCAAGAAGAAGGGTCCTGTTTTTCTAGCTGCTACAACTCCATTGAATCTCATTGCTACTATCCTTGGTTCACAATTTTTACTGACTGATGGAACCAGCTTGGGAAGGATCAAAGAAATGGATTCAAAGAAGCCTTACTTTGCTGCTATTGTTTCCCAAATCACTTTTGCTGGGATGAGTCTATTCTCAAAGGCAGCCTTTGCTTCTGGTATGAATACTTATATTTTCCTTTTCTACAGGCAAACTGTTGGGACTCTCTTCTTACTGCCCCCCACCATTTATTTCAAAAGAAAGGAAATGGCATGTTTATCAGTAGGAGATTTGTGGAAGATTTTCATGCAGGCCATTTTGGGGTTCACATTGGGTTTGAATGCTTATGGGTTAGGAGTTAAGTATACATCAGCAACTTTGGGTGCTGCAGCCTTTAATTGTGTTCCTGTCACCACATTCTTCTTTGCTCTTATTTCAAGGATGGAGAAAGTAAACATAAGGAAAGCAAGTGGAATGGCAAAGATTGGAGGCATAATGTTGTGCATTGCAGGGGTTGCAGTTCTTGCATTTTACAAAGGCCCTTATTTCAAACCACTCTTCAATTTTCACCTTTTTCAAATCCATCAATCTCATGTTTCTTCCCAAAAAACATGGATTCTTGGTTGCTTTTTGCTCCTTGTTTCTTCCCTTTCATGGGGTTTGTGGTTTGTCCTTCAGGCTTGGGTTTTAAAGACTTGCCCATCTCCACTTGTGTTAACATTTGGACAGACATTTTCAAGTGCCATTCAATCTTTCGTTGTGGCTATTGCAATAGAAAGAAATCCTTCTCAATGGAAATTGGCTTGGAATATTCGTCTCTTTGCTGTTCTTTATTGTGGAATTTTTGCAATGTGTGTTGCAAACTATTTGTCAAGTTGGGTGATAAAAAAGAAGGGTCCAGTTTTCCAAGCTGTTTCCACACCCTTCAATCTCATTTTCACACTCATTGGTTCAGAATTTCTTTTAAATGATGGAGTTAGCTTGGGAAGTATAATAGGTGGCATGTTGCTGGTTTTGAGCCTTTATAGTGTTTTATGGGGAAAAAAGAAGGAAATGAATTGTCACGATACAGAAAATTACAAGACTGATTCTGTTCCACTGGAAAAAGAAATGTTAGATCACATTTGA 2637 42.78 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQEVLLSSVYFLDDDGDDDDEPPLIAAIIVQITYSGMSILAKAAFASGMNNFIFIFYRQAFGTLSLIPPTIIFKRHWFLKTCPSPLVLTCGQTLASTFQTFVVAIAVRNKSFTIEVRLLAVLYCGIFVILIGKYLGCWVIKKKGPVFLAATTPLNLIATILGSQFLLTDGTSLGRIKEMDSKKPYFAAIVSQITFAGMSLFSKAAFASGMNTYIFLFYRQTVGTLFLLPPTIYFKRKEMACLSVGDLWKIFMQAILGFTLGLNAYGLGVKYTSATLGAAAFNCVPVTTFFFALISRMEKVNIRKASGMAKIGGIMLCIAGVAVLAFYKGPYFKPLFNFHLFQIHQSHVSSQKTWILGCFLLLVSSLSWGLWFVLQAWVLKTCPSPLVLTFGQTFSSAIQSFVVAIAIERNPSQWKLAWNIRLFAVLYCGIFAMCVANYLSSWVIKKKGPVFQAVSTPFNLIFTLIGSEFLLNDGVSLGSIIGGMLLVLSLYSVLWGKKKEMNCHDTENYKTDSVPLEKEMLDHI 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32084613 32095742 + CePI673135_04g012500.1 Cec04g1250 200732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1250 878 PANTHER ACTIN 8 357 IPR004000 -
Cec04g1250 878 FunFam Major actin 261 340 - -
Cec04g1250 878 FunFam Actin, alpha skeletal muscle 3 158 - -
Cec04g1250 878 SUPERFAMILY Multidrug resistance efflux transporter EmrE 572 682 - -
Cec04g1250 878 PRINTS Actin signature 238 254 IPR004000 -
Cec04g1250 878 PRINTS Actin signature 51 62 IPR004000 -
Cec04g1250 878 PRINTS Actin signature 117 130 IPR004000 -
Cec04g1250 878 PRINTS Actin signature 63 85 IPR004000 -
Cec04g1250 878 PRINTS Actin signature 28 37 IPR004000 -
Cec04g1250 878 PRINTS Actin signature 142 161 IPR004000 -
Cec04g1250 878 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cec04g1250 878 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cec04g1250 878 FunFam Actin, muscle 182 273 - -
Cec04g1250 878 SMART actin_3 7 365 IPR004000 -
Cec04g1250 878 Gene3D - 10 360 - -
Cec04g1250 878 Pfam Actin 5 359 IPR004000 -
Cec04g1250 878 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cec04g1250 878 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cec04g1250 878 SUPERFAMILY Actin-like ATPase domain 149 359 IPR043129 -
Cec04g1250 878 Gene3D Actin; Chain A, domain 4 182 273 - -
Cec04g1250 878 Gene3D - 140 340 - -
Cec04g1250 878 SUPERFAMILY Multidrug resistance efflux transporter EmrE 770 853 - -
Cec04g1250 878 Pfam EamA-like transporter family 710 848 IPR000620 GO:0016020(InterPro)
Cec04g1250 878 Pfam EamA-like transporter family 538 677 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1250 Cec-Chr4:32084613 Cec10g1770 Cec-Chr10:32419855 4.50E-202 dispersed
Cec04g1250 Cec-Chr4:32084613 Cec04g1253 Cec-Chr4:32114319 3.00E-113 proximal
Cec08g0728 Cec-Chr8:19001705 Cec04g1250 Cec-Chr4:32084613 1.20E-65 transposed
Cec02g0081 Cec-Chr2:753254 Cec04g1250 Cec-Chr4:32084613 1.00E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1250 K10355 - csv:101215469 711.835