Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1253 ATGAGTCTTCTTTCCAAAGCAGCCTTTGCTTCTGGCATGAATACCTTTGTCTTTGTCTTCTACAGACAAGCTGCTGGAGCTGTTTTTTTCCTTCCTCTTATGTTCTTCTTGAAAAGAAAAGACAGCCCATCTCTTTCTCTTAAAGATTTCTTCAAGATTTTCGCGATTTCGCTAATAGGGATGACTGTTGGATTTAATGCCTATGGTGTGGCTGTTGATTATACATCTGCAAATTTGGGTGCTGCTGCATTTAATTGCCTCCCTGTCACAACATTTCTCTTTGCTGTTTTATTAAGGATGGAGAAAGTAAACTTGAGAACAGTGGCTGGAATGGCAAAGGCTTTTGGAATATTAGTTTGCATTGGAGGAGTGATCACACTTGCATTCTACAAAGGTCCTTATTTGAAGCCACTCATCAACCATCACCTTTTGAAATTTCACAACTCCCATGCCCATCAAACTCATTCCTATTCTTCTGAAACTTGGATTATTGGTTGCTTTCTTCTCTTCGTCTCCAGTATCTCTTGGGGTTTGTGGTTTGTTCTCCAGGCTCATTTTCTCAAGACTTATCCATCACCATTGGAGTTTGTAAGTTACCAAACACTCTTAAGCACAGTCCAATCTTTTGTGATAGCTATTGCAATGGAAAGAGATCCTTCTGAGTGGAAGTTGGGTTGGAACATTAGGCTTCTTGCGGTTCTTTACTGCGGAGTTCTTGTAACTGTTGTTTCAAATATATTACAATGTTGGGTAATCAAAGAGAAGGGGCCAGTTTTTCAAGCCATGACAACGCCATTGAATGTGATTGCTACTATTATTGGCTCTGAATTGCTATTGGGTGAAGGAATCAACTTGGGAAGTCTCATTGGTGCAATTTTGTTGGTGCTTAGCCTTTACAGTGTATTATGGGGGAAAAGCAAAGAGCTAAGCATTATTGATAGAGATAATAATAATCAAACAGATGTATTTGTTCCACCTCAGTTACCAAAAGATTTGACAGAAATGAGATCACCTGCTGAGCCATAG 1026 39.47 MSLLSKAAFASGMNTFVFVFYRQAAGAVFFLPLMFFLKRKDSPSLSLKDFFKIFAISLIGMTVGFNAYGVAVDYTSANLGAAAFNCLPVTTFLFAVLLRMEKVNLRTVAGMAKAFGILVCIGGVITLAFYKGPYLKPLINHHLLKFHNSHAHQTHSYSSETWIIGCFLLFVSSISWGLWFVLQAHFLKTYPSPLEFVSYQTLLSTVQSFVIAIAMERDPSEWKLGWNIRLLAVLYCGVLVTVVSNILQCWVIKEKGPVFQAMTTPLNVIATIIGSELLLGEGINLGSLIGAILLVLSLYSVLWGKSKELSIIDRDNNNQTDVFVPPQLPKDLTEMRSPAEP 341
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 32114319 32118604 - CePI673135_04g012530.1 Cec04g1253 200735
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1253 341 PANTHER WAT1-RELATED PROTEIN 1 314 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cec04g1253 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 21 128 - -
Cec04g1253 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 203 306 - -
Cec04g1253 341 Pfam EamA-like transporter family 164 302 IPR000620 GO:0016020(InterPro)
Cec04g1253 341 Pfam EamA-like transporter family 10 121 IPR000620 GO:0016020(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0081 Cec-Chr2:753254 Cec04g1253 Cec-Chr4:32114319 7.70E-47 dispersed
Cec02g0082 Cec-Chr2:764182 Cec04g1253 Cec-Chr4:32114319 8.10E-89 dispersed
Cec04g1253 Cec-Chr4:32114319 Cec04g1255 Cec-Chr4:32150271 5.70E-113 dispersed
Cec04g1250 Cec-Chr4:32084613 Cec04g1253 Cec-Chr4:32114319 3.00E-113 proximal
Cec04g1253 Cec-Chr4:32114319 Cec04g1254 Cec-Chr4:32128548 1.20E-115 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1253 - - - 0.0