Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g1258 | ATGGAAGGAAGAGCTAAAAGGAAACTTGCAAGACGGGGCCAGCTAGTTTTGCTAAGGGGACTCACTTTACCGTGTGCGGGGAATCCTCGAAGATATGCGTTTCTAGTCGATTTTCCAATGTTGGGTAGACTCATTGCTGGGTCTCACAATAGAAATGAGTTTATTCTGATCAATGCAGATGAGACTGCTCGGATCAAGTCCGTGAAAGAATTGAGTGGGCAAACATGTCAGATTTGTGGAGATGAGGTAGAGTTAACTGCTGAGGGAGAACTCTTTGTTGCCTGTAATGAATGTGCTTTTCCAGTTTGTAGACCTTGCTATGAGTATGAGAGAAGAGAGGGGAATCAAGCTTGTCCGCAGTGTAAAACCAGATACAAGCGCATTAAAGGCAGTCCTAGGGTTGAAGGTGATGAGGATGAAGATGATATTGATGATTTGGACAACGAGTTCGACTATGGAAACCTCGATGCTTTGGGCCCTCATCATACTGCAGAGGGAATGTACTCGCACCTTAACACCGGCCATGGTTCCCACCCTAATGCATCTCATATCCCTGGACAGTCCGAGCACGAACCATCTCCCCTTGGTTCTGAGATTCCTCTCCTGACATATGGCGAGGAGGATTATGAAATTTCTTCTGATCAACATGCTCTTGTACCCCATTTTATGGGTAATGGAAATAGAGTCCATCCAATGCCTTCCCCTGATCTATCAAGTCCTTCTCAATGTAGACCAATGGTTCCCCACAAAGATTTTGCATTATATGGTTATGGGAGTGTGGCATGGAAGGACAGAATGGAAGATTGGAAGAAGAAGCAAAATGATAAACTTCAAGTGGTGAAACACCCAGGGGTTGATGATGATGGAAACGATATCGATGATCCTGATTTGCCCATGATGGATGAAGCTAGGCAACCACTATCAAGGAAATTGCCTATCTCTTCGAGCAGGATAAATCCGTACAGATTAATCATCTTGCTTCGTCTTGTTATTCTAGGCCTGTTTTTCCATTACCGAATTCTTCATCCTGTTAAAGATGCCTATGGCCTGTGGTTGACTTCAGTAATATGTGAAATATGGTTTGCTGCATCGTGGATTCTCGACCAGTTCCCAAAATGGTATCCAATTGAAAGGGAAACTTATCTTGATAGGCTTTCATTGAGGTATGAAAAAGAAGGGAAACCTTCTGAATTAGCCAGTGTGGACGTATTTGTTAGTACTGTCGATCCAATGAAAGAACCTCCATTGATCACTGCAAATACAGTACTTTCCATCCTTGCAGTCGACTATCCAGTTGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCAGCCATGTTAACATTTGAAGCACTCTCTGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTGTAAGAAATTTAATATTGAGCCCCGTGCCCCAGAATTTTATTTCTCTCAGAAGATCGATTATTTGAAGAACAAGGTCCACCCAGCATTTGTCAGGGAAAGGCGAGCAATGAAGAGAGAATATGAAGAATTTAAGGTTAGGGTAAATGCTTTGGTCTCCATGGCTCAAAAGGTTCCAGATGATGGCTGGACAATGCAAGATGGTACTCCATGGCCTGGGAACAATGTTCGAGATCACCCTGGCATGATTCAGGTCTTCCTTGGCCAAAATGGAGTTTGTGATGTTGAAGGAAATGAGCTACCACGTTTGGTTTATGTTTCTCGTGAAAAGCGACCAGGGTTTGAACATCACAAAAAGGCTGGTGCCATGAATGCACTGGTTCGGGTCTCGGCAGTTCTCTCAAATGCTCCTTATCTTCTCAATGTTGACTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCTACATCTGGGAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGATTTGATGGGATTGATCGACATGATAGATATTCAAACCGGAACGTTGTATTCTTTGATATTAACATGAAAGGATTAGATGGACTACAAGGACCTATATATGTTGGTACGGGATGTGTTTTCCGGAGGGTTGCCCTATATGGATATGATGCTCCTTCCAAGAAGAAACCCCCAAGCAAAACATGCAACTGTTTGCCAAAATGGTGCTGTCTGTGTTGTGGGTCTAGGAGCAAGAAAGGAAAGGCCAACAATCCAAAAAAGAAGAAGACGAAGCACAGAGAAGCATCAAAGCAGATCCATGCACTTGAGAATATTGAGGAGGGAATCGAAGGCCTAAGTATAGAGAAATTGAATGCGTCTGAAATAAAATTGGCGAAAAAATTTGGGCAATCTCCAGTGTTTGTTGCCTCAACCCTGTTGGAAAATGGAGGAGTTCCCCATGATGTGAGTGCTGCATCTCTCCTAAGAGAAGCCATTCAAGTGATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGATGGATTTATGGTTCTGTGACTGAAGATATCTTGACTGGATTTAAAATGCACTGTCACGGCTGGCGGTCCGTGTACTGTATTCCCAAGAGACCCGCGTTTAAAGGGTCGGCTCCAATCAATCTCTCAGATCGATTACACCAAGTTCTGCGGTGGGCTCTAGGATCTGTTGAGATATTCTTGAGCAGACACTGTCCTATCTGGTATGGATATGGAGGCGGGTTGAAATGGTTGGAGCGATTTTCATACATAAACTCAGTGGTCTATCCGTGGACCTCGATTCCATTGCTTGTTTACTGTAGTCTGCCAGCTATCTGTCTTCTCACTGGAAAATTTATTGTTCCTGAGATTAGCAACTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCAATTGCTGCAACCGGTATCCTTGAGATGCAATGGGGTGGTGTTGGGATTGACGACTGGTGGAGAAACGAACAGTTCTGGGTTATTGGAGGCGTTTCGTCACATCTTTTTGCTCTCTTTCAAGGTCTACTCAAGGTTTTAGCTGGTGTTAGTACCAACTTCACAGTTACATCGAAAGCAGCGGATGATGGTGAATTTTCAGAGCTCTATATCTTCAAGTGGACATCATTGTTAATACCTCCCACAACCTTGTTGATCATAAACATTGTTGGTGTGATCGTCGGGATCTCAGATGCCATCAATAATGGGTACGATTCCTGGGGTCCTCTTTTCGGAAGGCTATTTTTCGCTCTTTGGGTGATTATCCACCTCTACCCTTTCTTGAAAGGATTGTTAGGGAAACAAGACCGGTTACCGACAATCATTGTTGTTTGGTCAATTCTTTTAGCCTCAATCTTAACATTACTCTGGTATGATGTAGATAGAGGGGATTGGGTTGGTTGGAGTGTTGAATTGAATGCCACTCTATTGACTTTCCATTTGAATTTCAACTTTGAATCGCATTGTTCTTCACCTGAAAACTATGGATCCTCAACTGTTCCTTGTGTTTTCCTTGACATCGATCAGAAGATTTTTTATCCTCGTATCTGTGCTGATATCGTCCAAGCTGGATGTTTTATGTTTCTTTTGTCATAG | 3540 | 42.82 | MEGRAKRKLARRGQLVLLRGLTLPCAGNPRRYAFLVDFPMLGRLIAGSHNRNEFILINADETARIKSVKELSGQTCQICGDEVELTAEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDDIDDLDNEFDYGNLDALGPHHTAEGMYSHLNTGHGSHPNASHIPGQSEHEPSPLGSEIPLLTYGEEDYEISSDQHALVPHFMGNGNRVHPMPSPDLSSPSQCRPMVPHKDFALYGYGSVAWKDRMEDWKKKQNDKLQVVKHPGVDDDGNDIDDPDLPMMDEARQPLSRKLPISSSRINPYRLIILLRLVILGLFFHYRILHPVKDAYGLWLTSVICEIWFAASWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRVNALVSMAQKVPDDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDVEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRVALYGYDAPSKKKPPSKTCNCLPKWCCLCCGSRSKKGKANNPKKKKTKHREASKQIHALENIEEGIEGLSIEKLNASEIKLAKKFGQSPVFVASTLLENGGVPHDVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRLPTIIVVWSILLASILTLLWYDVDRGDWVGWSVELNATLLTFHLNFNFESHCSSPENYGSSTVPCVFLDIDQKIFYPRICADIVQAGCFMFLLS | 1179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 32203023 | 32210375 | + | CePI673135_04g012580.1 | Cec04g1258 | 200740 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g1258 | 1179 | MobiDBLite | consensus disorder prediction | 174 | 194 | - | - | |
Cec04g1258 | 1179 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 313 | 1096 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
Cec04g1258 | 1179 | MobiDBLite | consensus disorder prediction | 719 | 738 | - | - | |
Cec04g1258 | 1179 | ProSiteProfiles | Zinc finger RING-type profile. | 76 | 122 | IPR001841 | - | |
Cec04g1258 | 1179 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 414 | 945 | IPR029044 | - | |
Cec04g1258 | 1179 | Pfam | Cellulose synthase | 401 | 1109 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
Cec04g1258 | 1179 | FunFam | Cellulose synthase | 518 | 692 | - | - | |
Cec04g1258 | 1179 | FunFam | Cellulose synthase | 58 | 149 | - | - | |
Cec04g1258 | 1179 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 554 | 693 | IPR029044 | - | |
Cec04g1258 | 1179 | Pfam | Zinc-binding RING-finger | 66 | 142 | IPR027934 | - | |
Cec04g1258 | 1179 | CDD | mRING-HC-C4C4_CesA | 74 | 124 | - | - | |
Cec04g1258 | 1179 | SUPERFAMILY | RING/U-box | 62 | 148 | - | - | |
Cec04g1258 | 1179 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 149 | IPR013083 | - | |
Cec04g1258 | 1179 | MobiDBLite | consensus disorder prediction | 722 | 737 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g1258 | Cec-Chr4:32203023 | Cec08g0017 | Cec-Chr8:392330 | 0.00E+00 | dispersed | |
Cec04g1258 | Cec-Chr4:32203023 | Cec02g0927 | Cec-Chr2:12228845 | 3.00E-108 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g1258 | K10999 | - | csv:101211094 | 2099.71 |