Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1276 ATGAGGTCATCGGCGTCGGAAGAAGAGATAATGGTGAGTCTATTCCAAGCAGATCAAGAGGCGGCCGCCGTGAACGCCGCCACTATCACCACCAATTTCATATCTTTTCCCGAAGCCAACAACAACAACAACAATAACAATAACAATAACGTTGTTGTTCAACAATCCTTGAAACCCTTTTCCTTCAGTACTCAACAATATTTCTGTCAACAACAACAACAACAATCCCTTTTCCCTTTTTTCTTCCCTACAACCACTGCTCCCTCTAATCTCCTTTCCTCTCACAACACACCCTCTCCTTCCTCTCTCTGGGATGAAAAGGAGAGGTTTATGAGAGGGAGAAATAATGGGATTGGAAATTATGTTGATGATGATGATAACGACGATGACTGTAAGCCGCGGTTGAGGGTGTCGACGATGAAGATGAAGAGGATAAAAGGGAGGAAGAAAGTGAGAGAGCCAAGATTCAGCTTCAAGACCATGACGGATGTGGATGTTCTTGACGATGGTTACAAATGGAGAAAGTACGGCCAAAAAGTTGTGAAGAACACCCTCCATCCAAGAAGTTACTATCGTTGCACCGAAGAGAATTGTAAGGTAAAGAAACGAGTTGAAAGATTAGCCGATGATCCAAGAATGGTGATAACAACTTATGAAGGAAGACATGCTCATTCACCTTCAGATCATAATTTAGAAGACTCTATCATGGGTCACTTACCCTCCTCCCACCTCAGTAATTTCCTCTGCTAG 750 43.07 MRSSASEEEIMVSLFQADQEAAAVNAATITTNFISFPEANNNNNNNNNNNVVVQQSLKPFSFSTQQYFCQQQQQQSLFPFFFPTTTAPSNLLSSHNTPSPSSLWDEKERFMRGRNNGIGNYVDDDDNDDDCKPRLRVSTMKMKRIKGRKKVREPRFSFKTMTDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLADDPRMVITTYEGRHAHSPSDHNLEDSIMGHLPSSHLSNFLC 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32367030 32369420 - CePI673135_04g012760.1 Cec04g1276 200758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1276 249 Gene3D WRKY domain 150 227 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1276 249 SMART WRKY_cls 167 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1276 249 SUPERFAMILY WRKY DNA-binding domain 159 226 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1276 249 FunFam WRKY transcription factor 57 153 227 - -
Cec04g1276 249 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 35 228 IPR044810 GO:0003700(InterPro)
Cec04g1276 249 Pfam WRKY DNA -binding domain 168 224 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1276 249 ProSiteProfiles WRKY domain profile. 162 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0106 Cec-Chr2:1104626 Cec04g1276 Cec-Chr4:32367030 2.00E-46 dispersed
Cec04g1276 Cec-Chr4:32367030 Cec05g0011 Cec-Chr5:140102 4.00E-31 dispersed
Cec04g1276 Cec-Chr4:32367030 Cec04g1283 Cec-Chr4:32469933 4.20E-20 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29341 PF03106 WRKY 4.50E-25 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1276 - - - 0.0