Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g1276 | ATGAGGTCATCGGCGTCGGAAGAAGAGATAATGGTGAGTCTATTCCAAGCAGATCAAGAGGCGGCCGCCGTGAACGCCGCCACTATCACCACCAATTTCATATCTTTTCCCGAAGCCAACAACAACAACAACAATAACAATAACAATAACGTTGTTGTTCAACAATCCTTGAAACCCTTTTCCTTCAGTACTCAACAATATTTCTGTCAACAACAACAACAACAATCCCTTTTCCCTTTTTTCTTCCCTACAACCACTGCTCCCTCTAATCTCCTTTCCTCTCACAACACACCCTCTCCTTCCTCTCTCTGGGATGAAAAGGAGAGGTTTATGAGAGGGAGAAATAATGGGATTGGAAATTATGTTGATGATGATGATAACGACGATGACTGTAAGCCGCGGTTGAGGGTGTCGACGATGAAGATGAAGAGGATAAAAGGGAGGAAGAAAGTGAGAGAGCCAAGATTCAGCTTCAAGACCATGACGGATGTGGATGTTCTTGACGATGGTTACAAATGGAGAAAGTACGGCCAAAAAGTTGTGAAGAACACCCTCCATCCAAGAAGTTACTATCGTTGCACCGAAGAGAATTGTAAGGTAAAGAAACGAGTTGAAAGATTAGCCGATGATCCAAGAATGGTGATAACAACTTATGAAGGAAGACATGCTCATTCACCTTCAGATCATAATTTAGAAGACTCTATCATGGGTCACTTACCCTCCTCCCACCTCAGTAATTTCCTCTGCTAG | 750 | 43.07 | MRSSASEEEIMVSLFQADQEAAAVNAATITTNFISFPEANNNNNNNNNNNVVVQQSLKPFSFSTQQYFCQQQQQQSLFPFFFPTTTAPSNLLSSHNTPSPSSLWDEKERFMRGRNNGIGNYVDDDDNDDDCKPRLRVSTMKMKRIKGRKKVREPRFSFKTMTDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLADDPRMVITTYEGRHAHSPSDHNLEDSIMGHLPSSHLSNFLC | 249 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 32367030 | 32369420 | - | CePI673135_04g012760.1 | Cec04g1276 | 200758 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g1276 | 249 | Gene3D | WRKY domain | 150 | 227 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec04g1276 | 249 | SMART | WRKY_cls | 167 | 226 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec04g1276 | 249 | SUPERFAMILY | WRKY DNA-binding domain | 159 | 226 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec04g1276 | 249 | FunFam | WRKY transcription factor 57 | 153 | 227 | - | - | |
Cec04g1276 | 249 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 35 | 228 | IPR044810 | GO:0003700(InterPro) | |
Cec04g1276 | 249 | Pfam | WRKY DNA -binding domain | 168 | 224 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec04g1276 | 249 | ProSiteProfiles | WRKY domain profile. | 162 | 227 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec02g0106 | Cec-Chr2:1104626 | Cec04g1276 | Cec-Chr4:32367030 | 2.00E-46 | dispersed | |
Cec04g1276 | Cec-Chr4:32367030 | Cec05g0011 | Cec-Chr5:140102 | 4.00E-31 | dispersed | |
Cec04g1276 | Cec-Chr4:32367030 | Cec04g1283 | Cec-Chr4:32469933 | 4.20E-20 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29341 | PF03106 | WRKY | 4.50E-25 | CL0274 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g1276 | - | - | - | 0.0 |