Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1309 ATGGCGAATGAGTTTGGTGAATCAACAAGTGTGCCACATCAAAACCCATCTTGGTCTGCTAATAGTGAAACTACTAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGACCCAATTATCACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGCCCTGTTTGTAAGGCTCTTATTCAGGAGGAAAAATTGGTTCCTCTTTATGGTAGGGGTAAAATTCCATCTGATCCAAGATTAAATAGATATCCTGGTATTGATATTCCAATTCGTCCTGCTGGGCAAAGACCTCAAACAGCACCACCCCCTGTTCCTAATGACTTTGCAAATTATGGTTTTGGATTCACTGGTGGCTTTATGCCAATGGCAACAGCAAGGATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTTTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACTGTTTATGGAACTACTTCTGCTTACCCTTATGCATTCAACGCCTTTCATGGAGGTCATGGTCACCATTTTCCGCAACCGTCGACTCGAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTCTGGTGGTTTGATTTTTGTTGTGTTACACTTGCTTCTAGTTCTGAATCAAAGCTTGGTTTGCTGTGCTAG 747 40.96 MANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPIRPAGQRPQTAPPPVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSAYPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWWFDFCCVTLASSSESKLGLLC 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32698725 32699962 + CePI673135_04g013090.1 Cec04g1309 200791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1309 248 Pfam Zinc finger, C3HC4 type (RING finger) 33 74 - -
Cec04g1309 248 CDD RING-HC_AtRMA-like 32 76 - -
Cec04g1309 248 SMART ring_2 34 74 IPR001841 -
Cec04g1309 248 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Cec04g1309 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 220 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Cec04g1309 248 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Cec04g1309 248 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 17 88 - -
Cec04g1309 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 88 IPR013083 -
Cec04g1309 248 MobiDBLite consensus disorder prediction 1 24 - -
Cec04g1309 248 SUPERFAMILY RING/U-box 30 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1309 Cec-Chr4:32698725 Cec07g0335 Cec-Chr7:3252421 2.60E-22 dispersed
Cec10g1776 Cec-Chr10:32480947 Cec04g1309 Cec-Chr4:32698725 1.30E-24 transposed
Cec04g1309 Cec-Chr4:32698725 Cec08g1585 Cec-Chr8:27386484 1.80E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1309 K10666 - csv:101205026 446.047