Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1314 ATGGGAATCGCTAAAGGTCCATTAATTTTGTCCAATAAGGCAACCAGTTGTGCCAATTCTTCTATGTCCCACGATTATCATCATCATCATCATCAAGGAATCTTCACCTTCTCTAATGGCACCTTGGATAAATCCAATTCCTCCACCCTCCCTCAACACATCCGCCCTGAGAAGCTCCTACTCGACGCCTTCTCCGCCCCTATTCCGCCATCTACGGTGGCCGAAATAGACGAACACCACCCCCACCACCATCACCAACAACAACTTCATCATGTCTATGCCACCACACCTAGTGGGGGGACCATGTTATCCGACATGTTCAATTTCCCTCCAACAACTCCCTCCGCCCCCGTTCCCGTTGAATTCTCCGACAATTTCCGAACTTTACGCCCTCCCAACTCGGCCTCGGCCATGCAACTTTTCTTGATGAACCCTCCTCCACCACCACAACCCCAACCACGATCTCCATCGCCACCTTCTACCTCCTCCACTCTCCACATGCTCCTCCCGAACCCACCTGCGAACGCTCTTCAGGGTTTCGAAGGTGGGGTTGGTGTCGGAGATCAAACGGCTTTCGGTCAATTCGCTGTGGTCGAAAGTCAAGGTCTTTCACTCTCACTTCACTCTTCCTCTTTACAACACTTGGAGGACGCGGCAGCTGCTGCTGCCGTCGCGAAAGCAGATGAATTGAGAATTAGGGATGGTGGGATTTTGTATAATTATAACAACAACAACAATCAAGTCCTTGATGGAGGCGATGGAGGAAGTGGATCAACATCATCAATTTTGCACTATTCTTTTAGAAATAATGAGAATTCTCCTCATAGCTTTCAAGCTCCACAAATAATGAATCCCAACCATCAAGTTCAAATTGGATTTGGGTCATCTTTAGGAGTTGTAAATGTGTTGAGGAATTCAAAATATGCCAAACCTGCACAAGAATTGCTTGAGGAGTTTTGTAGTGTTGGCAAAGTTCAATTGAAGAAAAACAAGTTCAATATTAAGCCAAACCCCGATACCGAAACCGCCACCACCTCTGCCGCCGCTACCGGTGGCTCGAAATCAAAGGATCAACCTCCCTTATCAGCTGCTGACAGAATTGAGCATCAACGGAGAAAGGTCAAACTATTGTCCATGCTTGATGAGGTCGAACGTAGGTACAACCTATATCGAGAGCAAATGCAAATGGTAGTGAACTCGTTCGACCTAGTCATGGGGTTCGGAGCAGCAGCGCCTTACACAACGTTGACGCAGAAGGCGATGTCGAGGCACTTTCGGTGCTTGAAAGACGCGATTGCCGAGCAGCTAAAGCAGAGCTACGAAGCGTTGGGGGAGAAAGGAGGGAATGGAGGGTCAGGAATAACAAAAGGAGAGACACCAAGATTGAAGCTTCTTGAACAAAGCCTTCGCCAACAAAGGGCTTTCCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGGCCACAGCGTGGCCTTCCTGAAAGATCAGTCAACATTCTCAGGGCTTGGCTTTTCGAGCATTTTCTTCACCCGTACCCCAGCGACGCAGACAAGCTTCTGTTAGCTCGACAGACTGGTTTGTCCAGAAATCAGGTCTCGAATTGGTTCATTAATGCAAGAGTTCGATTGTGGAAACCGATGGTGGAAGAAATGTACCAACTTGAAGGGAAAGTGGATACAGATGAATCACAAGATGACACCACACACAATAATAATAATAATAATAATAAAACCCAAAACAATCCCATAAATAATTCACAAAATCCAACCCCCACCACTGCTCCACCCTCAGCCAGCTCCGTGGAAGAAGTAGCGGCGGAGTTCACGGCGGCTCATGAGTACTCAGATCTTCATGATGTGTGGCGACATGGAAGTAGTGGAGATCATCAACAACATTATGGGACCATGTCTGAAGATGTTACAACTGCTGCGGCTGACATGCATCCTGGACCAACACTTATAAGGTTTGGGACCACAAATACGGCCACCGGCGACGTGTCCCTAACTTTAGGCCTCCGCCACACCGGAAATACCTCCGCCGCCGCCGCCGCAGATAACCCTTCTTTCTCCCTAAGAGACTTTGGTCACTCTTGA 2094 48.09 MGIAKGPLILSNKATSCANSSMSHDYHHHHHQGIFTFSNGTLDKSNSSTLPQHIRPEKLLLDAFSAPIPPSTVAEIDEHHPHHHHQQQLHHVYATTPSGGTMLSDMFNFPPTTPSAPVPVEFSDNFRTLRPPNSASAMQLFLMNPPPPPQPQPRSPSPPSTSSTLHMLLPNPPANALQGFEGGVGVGDQTAFGQFAVVESQGLSLSLHSSSLQHLEDAAAAAAVAKADELRIRDGGILYNYNNNNNQVLDGGDGGSGSTSSILHYSFRNNENSPHSFQAPQIMNPNHQVQIGFGSSLGVVNVLRNSKYAKPAQELLEEFCSVGKVQLKKNKFNIKPNPDTETATTSAAATGGSKSKDQPPLSAADRIEHQRRKVKLLSMLDEVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAIAEQLKQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEGKVDTDESQDDTTHNNNNNNNKTQNNPINNSQNPTPTTAPPSASSVEEVAAEFTAAHEYSDLHDVWRHGSSGDHQQHYGTMSEDVTTAAADMHPGPTLIRFGTTNTATGDVSLTLGLRHTGNTSAAAAADNPSFSLRDFGHS 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32760880 32765855 + CePI673135_04g013140.1 Cec04g1314 200796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1314 697 ProSiteProfiles 'Homeobox' domain profile. 483 546 IPR001356 GO:0003677(InterPro)
Cec04g1314 697 CDD homeodomain 486 547 IPR001356 GO:0003677(InterPro)
Cec04g1314 697 SUPERFAMILY Homeodomain-like 487 554 IPR009057 -
Cec04g1314 697 Pfam Associated with HOX 302 433 IPR006563 -
Cec04g1314 697 Gene3D - 489 551 - -
Cec04g1314 697 MobiDBLite consensus disorder prediction 336 357 - -
Cec04g1314 697 MobiDBLite consensus disorder prediction 558 603 - -
Cec04g1314 697 Coils Coil 373 400 - -
Cec04g1314 697 SMART prehox3 297 434 IPR006563 -
Cec04g1314 697 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 213 582 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec04g1314 697 MobiDBLite consensus disorder prediction 142 158 - -
Cec04g1314 697 MobiDBLite consensus disorder prediction 140 167 - -
Cec04g1314 697 MobiDBLite consensus disorder prediction 567 599 - -
Cec04g1314 697 SMART HOX_1 486 550 IPR001356 GO:0003677(InterPro)
Cec04g1314 697 MobiDBLite consensus disorder prediction 332 364 - -
Cec04g1314 697 FunFam BEL1-like homeodomain protein 4 489 551 - -
Cec04g1314 697 Pfam Homeobox KN domain 503 542 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1362 Cec-Chr2:30712336 Cec04g1314 Cec-Chr4:32760880 4.40E-130 dispersed
Cec03g0289 Cec-Chr3:3276003 Cec04g1314 Cec-Chr4:32760880 2.10E-62 dispersed
Cec04g0909 Cec-Chr4:28829256 Cec04g1314 Cec-Chr4:32760880 2.20E-51 dispersed
Cec04g1314 Cec-Chr4:32760880 Cec11g0426 Cec-Chr11:4464511 9.10E-73 dispersed
Cec04g1314 Cec-Chr4:32760880 Cec10g1845 Cec-Chr10:33299423 2.30E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29344 PF07526 POX 9.90E-49 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1314 - - - 0.0