Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1378 ATGGAGTGGGTTCGAGGAGATGAGATTGGACATGGAAGTTTTGCCACCATCAATTTCGCCACGCCTTCCAATACTTATTCTGCTCATCAGTTTCCTCCATTAATGGCGGTTAAATCGTCTGGAGCTGTTTCCTCTGCCTCGCTCAAGAAGGAGAAGCAAGTTTTGGATCTTCTGGGTGTTGATTGCCCACAAATTATTCGGTGTTTTGGGGACAGTTGTAGTTACGAGAACGGCGAGGAACTTTACAATCTGTTTCTCGAGTATGCTAGTGGTGGGAGTTTAGCTGATAGAATACAGAGCCGCGGTGGTCGGCTACCGGAATTTGAGGTTAGACGTTACACGAAGACGATTCTCGAAGGGCTTCGGTATATTCACGGAAAAGGACTTGTTCACTGCGATGTAAAGCCTAGGAATATTCTCGTGTTTCATGACGGTGATGTTAAGATCGCGGATTTCGGATTATCGAAGAAGGCTGGAAAAAACAGAGCAGAAACAGGGGGAGAGGTAGGGAGATTTCAATTGAGAGGCTCTCCTCTGTACATGTCACCGGAATCGGTGAATGATAACGAGTATGAGTCGCCGTGTGACATATGGGCCGTCGGATGTGCGGTGGTCGAGATGTTGACAGGAAAACCCGCGTGGAATTGCCGGCCGGAATCCAACGTCTATTCTCTGTTACTAAAAATTGGGATCGGAGAGGAATTGCCGGAAATTCCTAAAGATCTATCGGAAGAAGGGAAAGATTTTCTCAGAAAATGCTTGGTGAAGGATCCTTCAAAGCGATGGACAGCCGATATGCTTCTGAAACACCCATTTGTAGCAGAGTCCGGGTGCTCTGTTCCATTGACGACCATGGACGAACCATCGACGTCGCCGAGATGCCCTTTCGATTTCGAAGATTGGGCATCGATTCAGTCAGAAGAGGGCGATCAGAGAATTGAGGAGGAATCAAATTGTTGGTTGAATTGGTCGTGTTCGTGGTTGTGTTGTCCGAGGAAGAGGCTGCTTCAGCTAGTGGACAATGGGCCAGTTAACTGGTCCGTCACGGACAGTTGGGTCACCGTCAGATGA 1071 48.09 MEWVRGDEIGHGSFATINFATPSNTYSAHQFPPLMAVKSSGAVSSASLKKEKQVLDLLGVDCPQIIRCFGDSCSYENGEELYNLFLEYASGGSLADRIQSRGGRLPEFEVRRYTKTILEGLRYIHGKGLVHCDVKPRNILVFHDGDVKIADFGLSKKAGKNRAETGGEVGRFQLRGSPLYMSPESVNDNEYESPCDIWAVGCAVVEMLTGKPAWNCRPESNVYSLLLKIGIGEELPEIPKDLSEEGKDFLRKCLVKDPSKRWTADMLLKHPFVAESGCSVPLTTMDEPSTSPRCPFDFEDWASIQSEEGDQRIEEESNCWLNWSCSWLCCPRKRLLQLVDNGPVNWSVTDSWVTVR 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33426970 33428040 + CePI673135_04g013780.1 Cec04g1378 200860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1378 356 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 274 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cec04g1378 356 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Cec04g1378 356 Gene3D Transferase(Phosphotransferase) domain 1 96 317 - -
Cec04g1378 356 SUPERFAMILY Protein kinase-like (PK-like) 3 298 IPR011009 -
Cec04g1378 356 ProSiteProfiles Protein kinase domain profile. 3 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1378 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1378 356 Pfam Protein kinase domain 5 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1378 356 SMART serkin_6 3 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1378 356 CDD STKc_MAPKKK 2 273 - -
Cec04g1378 356 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0212 Cec-Chr2:2047538 Cec04g1378 Cec-Chr4:33426970 3.30E-56 dispersed
Cec04g1378 Cec-Chr4:33426970 Cec09g1076 Cec-Chr9:10487751 7.40E-63 dispersed
Cec01g0306 Cec-Chr1:3125866 Cec04g1378 Cec-Chr4:33426970 1.70E-19 transposed
Cec04g0305 Cec-Chr4:12055674 Cec04g1378 Cec-Chr4:33426970 7.90E-38 transposed
Cec09g1113 Cec-Chr9:10912502 Cec04g1378 Cec-Chr4:33426970 1.70E-32 transposed
Cec02g1302 Cec-Chr2:29802504 Cec04g1378 Cec-Chr4:33426970 8.90E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71923 PF00069 Pkinase 1.90E-54 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1378 - - - 0.0