Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1382 ATGGACCATTCTATTCCCAACAACTGCGATGGAAATGCATGTAATTCGTCGACGTGGACTCTCCCCACCGCCGCCGTCTCCTCCTCTTCCCCTCCCGACGATATCTCTCTGTTTCTGCAACAGATTTTGCTACGTTCCTCTTCCTCTGTTCCCCATTCCTCTATCCTCTCTCCCTCTCCCTCCATCTTCTCCGAGCTCACCTGCAACATTAGAGCCTTCACCCCATCAACCCATAACATTCCCCCTCCATACGGGCCGTCTAATGCAGTGCCCGACGAGATCTCCGCCGTCGATTCCTCAGAACAATTTGCAAATTCCTCATCGTCCGGTGTACTACATGATCCCTTGCGCTCTTGTCCCACACCCATTCCACCCAATGCGTCTTCTACGTCGGTTGGAGCTAGTGATCACAACGAAAACGACGAATTTGACTGCGAAAGTGAGGAGGGTCTGGAGGCATTGGTTGAAGAGCAGCCTACAAAGCCAAATCCTCGCAGCTCTTCCAAAAGAAGCAGAGCCGCCGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGCAGAATTAATGAGAAAATGAAGGCACTGCAAAATCTGATCCCTAATTCTAACAAGACTGACAAGGCCTCGATGCTGGACGAAGCAATTGAATATCTGAAGCAGCTTCAACTTCAAGTTCAGATGCTGTCGATGAGAAATGGCTTGAGTTTGCATCCTATGAACTTGCCTGGAAGTCTGCAATATCTCCAACTTTCCCACATGAGAATGGACTTTGGTGAAGAAAACAGGTCAATGTCTTCTGACCAAGAAAACCAGATCTTTCTCAGTTTGCCTGACCAAAAGACTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGCAGAAACTCCATTTGAATTGACCCCGCCCATCCAGGCTCAACTAGTCCCTTTTTACTTGAGTGAGTCCTCCAAGTCTAAGGAGATTTGCAGCAGAGATGTACTGCGAGGTGATCACCAGGTGAATATGAATGTGAGCCAATCGGAGACAACTCCCTTCATGTCACACCCCTATATATCGGCGCCTCCTGATTTACAAGGATTAAGGAATTGCGTCTCAGTGGAACCAAGCATCATTGAAGGAAATCGGTCAGGTGTGCTTCTAAATTACACTCCAGAGCACAGCCTTGTATTCCCTTCCCCTCTTAATGGCATTGACACAGGAAGACCAACTGAAACAACAGAGCTGCAATGA 1239 47.7 MDHSIPNNCDGNACNSSTWTLPTAAVSSSSPPDDISLFLQQILLRSSSSVPHSSILSPSPSIFSELTCNIRAFTPSTHNIPPPYGPSNAVPDEISAVDSSEQFANSSSSGVLHDPLRSCPTPIPPNASSTSVGASDHNENDEFDCESEEGLEALVEEQPTKPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNLPGSLQYLQLSHMRMDFGEENRSMSSDQENQIFLSLPDQKTASIHPFMSDIGRTNAETPFELTPPIQAQLVPFYLSESSKSKEICSRDVLRGDHQVNMNVSQSETTPFMSHPYISAPPDLQGLRNCVSVEPSIIEGNRSGVLLNYTPEHSLVFPSPLNGIDTGRPTETTELQ 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33453695 33455878 - CePI673135_04g013820.1 Cec04g1382 200864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1382 412 Coils Coil 211 231 - -
Cec04g1382 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 232 IPR036638 GO:0046983(InterPro)
Cec04g1382 412 FunFam Basic helix-loop-helix transcription factor 167 230 - -
Cec04g1382 412 CDD bHLH_AtPIF_like 172 234 IPR047265 -
Cec04g1382 412 SMART finulus 178 227 IPR011598 GO:0046983(InterPro)
Cec04g1382 412 MobiDBLite consensus disorder prediction 168 184 - -
Cec04g1382 412 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 32 333 IPR031066 GO:0005634(PANTHER)
Cec04g1382 412 MobiDBLite consensus disorder prediction 98 184 - -
Cec04g1382 412 MobiDBLite consensus disorder prediction 98 114 - -
Cec04g1382 412 Gene3D - 167 231 IPR036638 GO:0046983(InterPro)
Cec04g1382 412 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983(InterPro)
Cec04g1382 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1382 Cec-Chr4:33453695 Cec09g0932 Cec-Chr9:8761070 2.70E-24 dispersed
Cec04g1382 Cec-Chr4:33453695 Cec05g2218 Cec-Chr5:33719264 3.30E-06 wgd
Cec04g1382 Cec-Chr4:33453695 Cec08g1663 Cec-Chr8:27954557 6.00E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29354 PF00010 HLH 4.90E-14 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1382 - - - 0.0