Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1386 ATGTGGGATCTGAACGATTGGCCTGATGTGAGGGAGGAGGATGAATGTTCGTCGGCGAAGACATCGATTGAAGGAGAGGGGGAGGAGGAGAAAGGGAAAAGAGTGGGATCGGTTTCCAATTCAAGTTCTTCGGCTGTGGTTGTGGAGGAGGAGGAAGATGTGGAAGTGGAAGGATCCGATGAGGAGGAACCCACGCCCATGGTCATCACTCGCCAGTTTTTCCCTCTCGAAGAAACTCCCCTTCCACCTCCTTCTTCTGCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGCCCACCCCGATCCTCTCGCCGCTCCTAATAATTCTATCACCCCCACCGACCTCTCTCACCCCATTAAGAAGAGCCGCCGCGGCCCAAGGTCCCGTAGCTCCCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGCCGTTGGGAGTCCCATATTTGGGATTGCGGAAAGCAAGTCTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGGGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTTAGCATCGAAGATTACGAAGACGATTTAAAACAGATGGGAAATCTAACCAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGCTTCCCCAGAGGGAGCTCCAAGTATAGAGGTGTAACACTTCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTCGATACCGAGATTGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATCTACGAGAATGAACTGAACCCGACAACTGACTCAAGTAGCAATTTCGCGGATCATAGTCTTGATTTGAGTTTAGGAAATTCAAGCTCAAAGCAAAACGACAGCTCAAATGGTTCCATAGGTCCACACCATTCTTCTTCAGCTGATTGGCAACGCAATCAAGGATTTAGGCCACTTCAGCTAAATTTGGAAAATGGAGGAGGTGGGAACAAAAATCACAATAATGTAGAGAGAAGAAATAGGTACCTGGAGAGTGAAACCATGCAGCTGCTAAGCCAAACGCACATTCAATCTCCCGCTTCATTTGAAATGCAAAGACACGGTCAGGCTCAATTCAGCCGGCCACAGACGGCGGTTGGCTCAGCAGATCAGCCAAACTCCCAGATATTGCTTCCCAATCACAACCACAATCCAACCTTCAACTATCAAATTCAGTTTTCAGGCAGCAGTAATGGAGGCCGAATGGTAGGAAGTGATTTATCACTATCTCTAAATGATCATCTTCAATCGGGGCCATCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCAGATTAGACCTTCCAAAAATTGGCTGCACAACAATGGCTTTCATTGTCTCATGAGACCCTCTTGA 1482 48.79 MWDLNDWPDVREEDECSSAKTSIEGEGEEEKGKRVGSVSNSSSSAVVVEEEEDVEVEGSDEEEPTPMVITRQFFPLEETPLPPPSSAAFPRAHWVGVKFAHPDPLAAPNNSITPTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNPTTDSSSNFADHSLDLSLGNSSSKQNDSSNGSIGPHHSSSADWQRNQGFRPLQLNLENGGGGNKNHNNVERRNRYLESETMQLLSQTHIQSPASFEMQRHGQAQFSRPQTAVGSADQPNSQILLPNHNHNPTFNYQIQFSGSSNGGRMVGSDLSLSLNDHLQSGPSQVLATAAASSGFAPQIRPSKNWLHNNGFHCLMRPS 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33487867 33490354 - CePI673135_04g013860.1 Cec04g1386 200868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1386 493 PRINTS Ethylene responsive element binding protein signature 227 238 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1386 493 PRINTS Ethylene responsive element binding protein signature 265 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1386 493 Pfam AP2 domain 134 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1386 493 Pfam AP2 domain 225 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1386 493 MobiDBLite consensus disorder prediction 105 134 - -
Cec04g1386 493 FunFam AP2-like ethylene-responsive transcription factor 225 285 - -
Cec04g1386 493 CDD AP2 134 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1386 493 SUPERFAMILY DNA-binding domain 133 191 IPR016177 GO:0003677(InterPro)
Cec04g1386 493 CDD AP2 225 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1386 493 SMART rav1_2 134 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1386 493 SMART rav1_2 226 289 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1386 493 FunFam AP2-like ethylene-responsive transcription factor 133 192 - -
Cec04g1386 493 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 362 - -
Cec04g1386 493 MobiDBLite consensus disorder prediction 290 335 - -
Cec04g1386 493 ProSiteProfiles AP2/ERF domain profile. 226 283 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1386 493 ProSiteProfiles AP2/ERF domain profile. 134 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1386 493 Gene3D AP2/ERF domain 225 284 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1386 493 Gene3D AP2/ERF domain 133 192 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1386 493 MobiDBLite consensus disorder prediction 48 62 - -
Cec04g1386 493 SUPERFAMILY DNA-binding domain 225 285 IPR016177 GO:0003677(InterPro)
Cec04g1386 493 MobiDBLite consensus disorder prediction 1 35 - -
Cec04g1386 493 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2188 Cec-Chr2:39317021 Cec04g1386 Cec-Chr4:33487867 1.80E-80 dispersed
Cec04g1020 Cec-Chr4:29793912 Cec04g1386 Cec-Chr4:33487867 1.30E-85 dispersed
Cec04g1386 Cec-Chr4:33487867 Cec10g2067 Cec-Chr10:35404544 4.00E-91 dispersed
Cec02g1293 Cec-Chr2:29578200 Cec04g1386 Cec-Chr4:33487867 6.00E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29355 PF00847 AP2 3.30E-10 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1386 K09284 - csv:101214724 768.074