Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1387 ATGGACGGCGGAGGAGAAGCTACCAGAAAAAGAGGGCTAGACAATCAGAGGCTTTACAAAGGGATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCTGAGATTCGAGAGCCCAATAAGCGCTCTAGGATTTGGCTCGGCTCTTACTCTTCTCCAGTCGCCGCCGCCAGGGCCTACGATACCGCCGTTTTTTACCTCAGAGGTCCTTCCGCCAGGCTTAATTTTCCCGAGTTGTTAGCAGGGGAAGGCCGTGGAATTAGTGCCGGCGCCGGCGACATGTCGGCGGCTACTATACGGAAGAAAGCCACGGAGGTGGGTGCAAGAGTGGATGCTCTGGAGAGTTCTTTAGGGCAACACAGTCACCACAACCGGAACCATCATTCCCACGCATCGGCGTCTCCGCCAGAGACAAAAGGCTGCAGCGGGTTTTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAGATGAAGAAGGGGATGGAGAGTTCGAGTGGGAGAGAGTCGAGAGACACTGA 522 54.79 MDGGGEATRKRGLDNQRLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGISAGAGDMSAATIRKKATEVGARVDALESSLGQHSHHNRNHHSHASASPPETKGCSGFLDRVDLNKLPDPEEEDEEGDGEFEWERVERH 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33511712 33512233 - CePI673135_04g013870.1 Cec04g1387 200869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1387 173 CDD AP2 19 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1387 173 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1387 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 160 - -
Cec04g1387 173 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Cec04g1387 173 MobiDBLite consensus disorder prediction 114 173 - -
Cec04g1387 173 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1387 173 SMART rav1_2 18 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1387 173 Pfam AP2 domain 19 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1387 173 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677(InterPro)
Cec04g1387 173 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1387 173 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1387 Cec-Chr4:33511712 Cec08g0152 Cec-Chr8:2914168 2.90E-20 dispersed
Cec02g1286 Cec-Chr2:29535832 Cec04g1387 Cec-Chr4:33511712 1.50E-41 wgd
Cec04g1387 Cec-Chr4:33511712 Cec05g2232 Cec-Chr5:33814343 3.60E-39 wgd
Cec04g1387 Cec-Chr4:33511712 Cec08g1666 Cec-Chr8:27992916 4.60E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29356 PF00847 AP2 2.30E-11 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1387 K09286 - csv:101214481 292.737