Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g1391 | ATGGCTGTGGAGATCAAGTCCCACCCTTACCCACTCCTCACTATGGAAGCCAACGCCGTCCAAGAAGCCGCTTCCGGCCTCGAAAGCGTCGAGAAGCTCATCCGATTACTTTCTAATGCAAATGCCCCTCAACCTCACTCCTTACCCTCCTCCACTCAATCCCCCATCGATTTCCCCACCGACTGCCGCGCCGCTGCCGATGTAGCCGTTTCCAAGTTCAAAAAGGTTATTTCTCTCCTCGGCCGTAGCCGCCTCGGCCACGCTCGTTTCAGGAGAGCTCCTCTGCCTCAACAACCTCACTACGCTACTCCCATACAGCAGATCCCACCCCATCCCCACCTTGACAACAACCACAACAATAACAACGACTCTGTTAATTTCTCCGCCCATAATTCCTTCATTTCCTCGTTGACCGGCGACGCCGACACCAAGCATCCTTCTTCCTCTTCCTCACCTTTTCTCATTACCAACCTCTCCCAAGTCTCCTCCGTTGTGAAACCACCTCTTTCTACTTCTTCCCTTAAGAGGAAGTGCAGCTCAGATAACTTGGGATCCAGCAAGTGCGCTGCTGCTTCTTCCTCTGCCCGATGTCACTGTTCCAAGAAGAGAAAACTGAGGGTGAAGAGGGTGGTGAGAGTTCCGGCGATAAGCTTGAAAATGGCGGATATCCCACCGGACGATTATTCATGGCGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGTGTGAGAGGTTGCCCAGCCCGAAAACACGTAGAACGGGCCGTAGACGATCCGACGATGCTAGTGGTGACTTACGAAGGAGAGCACAATCACACACTCTCTGTGCCCGAAACCTCCAGTCTCATCCTCGAGTCCTCTTAG | 894 | 52.68 | MAVEIKSHPYPLLTMEANAVQEAASGLESVEKLIRLLSNANAPQPHSLPSSTQSPIDFPTDCRAAADVAVSKFKKVISLLGRSRLGHARFRRAPLPQQPHYATPIQQIPPHPHLDNNHNNNNDSVNFSAHNSFISSLTGDADTKHPSSSSSPFLITNLSQVSSVVKPPLSTSSLKRKCSSDNLGSSKCAAASSSARCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPTMLVVTYEGEHNHTLSVPETSSLILESS | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 33561687 | 33562791 | - | CePI673135_04g013910.1 | Cec04g1391 | 200873 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g1391 | 297 | ProSiteProfiles | WRKY domain profile. | 219 | 285 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec04g1391 | 297 | MobiDBLite | consensus disorder prediction | 100 | 127 | - | - | |
Cec04g1391 | 297 | SUPERFAMILY | WRKY DNA-binding domain | 221 | 283 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec04g1391 | 297 | Pfam | Plant zinc cluster domain | 175 | 222 | IPR018872 | - | |
Cec04g1391 | 297 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 19 | 285 | IPR044810 | GO:0003700(InterPro) | |
Cec04g1391 | 297 | FunFam | WRKY transcription factor 65 | 208 | 285 | - | - | |
Cec04g1391 | 297 | Gene3D | WRKY domain | 208 | 285 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec04g1391 | 297 | Pfam | WRKY DNA -binding domain | 226 | 282 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec04g1391 | 297 | SMART | WRKY_cls | 224 | 284 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g1391 | Cec-Chr4:33561687 | Cec05g2882 | Cec-Chr5:38992546 | 2.90E-52 | dispersed | |
Cec02g0833 | Cec-Chr2:9990782 | Cec04g1391 | Cec-Chr4:33561687 | 5.60E-85 | transposed | |
Cec04g1391 | Cec-Chr4:33561687 | Cec05g2240 | Cec-Chr5:33863963 | 1.10E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29357 | PF03106 | WRKY | 3.80E-26 | CL0274 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g1391 | - | - | - | 0.0 |