Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1391 ATGGCTGTGGAGATCAAGTCCCACCCTTACCCACTCCTCACTATGGAAGCCAACGCCGTCCAAGAAGCCGCTTCCGGCCTCGAAAGCGTCGAGAAGCTCATCCGATTACTTTCTAATGCAAATGCCCCTCAACCTCACTCCTTACCCTCCTCCACTCAATCCCCCATCGATTTCCCCACCGACTGCCGCGCCGCTGCCGATGTAGCCGTTTCCAAGTTCAAAAAGGTTATTTCTCTCCTCGGCCGTAGCCGCCTCGGCCACGCTCGTTTCAGGAGAGCTCCTCTGCCTCAACAACCTCACTACGCTACTCCCATACAGCAGATCCCACCCCATCCCCACCTTGACAACAACCACAACAATAACAACGACTCTGTTAATTTCTCCGCCCATAATTCCTTCATTTCCTCGTTGACCGGCGACGCCGACACCAAGCATCCTTCTTCCTCTTCCTCACCTTTTCTCATTACCAACCTCTCCCAAGTCTCCTCCGTTGTGAAACCACCTCTTTCTACTTCTTCCCTTAAGAGGAAGTGCAGCTCAGATAACTTGGGATCCAGCAAGTGCGCTGCTGCTTCTTCCTCTGCCCGATGTCACTGTTCCAAGAAGAGAAAACTGAGGGTGAAGAGGGTGGTGAGAGTTCCGGCGATAAGCTTGAAAATGGCGGATATCCCACCGGACGATTATTCATGGCGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGTGTGAGAGGTTGCCCAGCCCGAAAACACGTAGAACGGGCCGTAGACGATCCGACGATGCTAGTGGTGACTTACGAAGGAGAGCACAATCACACACTCTCTGTGCCCGAAACCTCCAGTCTCATCCTCGAGTCCTCTTAG 894 52.68 MAVEIKSHPYPLLTMEANAVQEAASGLESVEKLIRLLSNANAPQPHSLPSSTQSPIDFPTDCRAAADVAVSKFKKVISLLGRSRLGHARFRRAPLPQQPHYATPIQQIPPHPHLDNNHNNNNDSVNFSAHNSFISSLTGDADTKHPSSSSSPFLITNLSQVSSVVKPPLSTSSLKRKCSSDNLGSSKCAAASSSARCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPTMLVVTYEGEHNHTLSVPETSSLILESS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33561687 33562791 - CePI673135_04g013910.1 Cec04g1391 200873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1391 297 ProSiteProfiles WRKY domain profile. 219 285 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1391 297 MobiDBLite consensus disorder prediction 100 127 - -
Cec04g1391 297 SUPERFAMILY WRKY DNA-binding domain 221 283 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1391 297 Pfam Plant zinc cluster domain 175 222 IPR018872 -
Cec04g1391 297 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 285 IPR044810 GO:0003700(InterPro)
Cec04g1391 297 FunFam WRKY transcription factor 65 208 285 - -
Cec04g1391 297 Gene3D WRKY domain 208 285 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1391 297 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1391 297 SMART WRKY_cls 224 284 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1391 Cec-Chr4:33561687 Cec05g2882 Cec-Chr5:38992546 2.90E-52 dispersed
Cec02g0833 Cec-Chr2:9990782 Cec04g1391 Cec-Chr4:33561687 5.60E-85 transposed
Cec04g1391 Cec-Chr4:33561687 Cec05g2240 Cec-Chr5:33863963 1.10E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29357 PF03106 WRKY 3.80E-26 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1391 - - - 0.0