Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1397 ATGAGATCGAGCCCAAGTTTTCTATTCGTCGCTGATAGTAAAGCAACAAACCTGATTCATTTGTATGATAAAATGGATAATGGAACTTCTAATAGTTCAACTCAATCTGCAGTCACCAATTCAGCTCCAATAGTTGATAGCCAAAGTAGTAAAGGAGATAATTTGACATCTATTTTATCTTCGTCTGGAATATCATCTTGGGCTAAGAGTTTCAGAAATCCACAACCACCTGAAGCAGCAGAAAATGACTCCAAAGCAGGAAATTCTGGGATGTCAGCAATTGCTCGTTTTAGTAGTGGTTTTGGACTCCGGATACCTGCGATGTCTCCTGTACAAAGTGATGGTGCTGCAGATACCAAACCAGCAATGCACTCTGGTGTTTTTGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAAGCACGTCATATTGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACCGAAAACATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTGGGATTCCTTGAGGGATTTTACAGAAACCATATGGAGGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCGCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCACAAAATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCGATTGACTATTATAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTATTTTGAGCGGATTTTAACACATTTCAACGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCATTACGATATCAAATCACAGTGAGATTTTGTTCTCAACAAGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTAGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCTGGGGATTTCAAGATTCATTTTCATGACCGGCATGGAGACTTTTACTGTTGGTTAAATACAACAATGACAGAAAACAAAATATTATTAAGTGACACGGATCTTGATGGTTTCGATAAGAGAAAACTTCCAACCCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTTCTTTGCCAACACGATTGAAAACTGATTCAACTAGCAAAGGATCTTATCGTCGCTCCATTCATGATCGAGCATCAGGTAATGAAGCAGCACAATCCAACACAAACAAAATTTCCGGAGGTGAAGAAAATGATGACGACGTATTCTCCGATAGTGATGAAGAAAATGGTGACATAAAAACCAGTCTAGCTCAATCAACTTCTGGAACTGGAAATGGAACTTCAAAAGCTGGTCATTCATCAACAGCAATTGCCTCCGGAAGAATTGGGAGTTTAGCGCATGATACTAGTTGTTTGACCCTCGGAAATGAGAAAAACTCGCAACCTAATGCTCCAAAAGAACCTGCCGTAATACAATCATCAGCCCTTGAGATCCCAAATTTGGATTTAGTAAGGGCAAGTGATTTCAAGGCAATAGCCGCCGATGCGTCAGTCTTCACATTTGGGGATGAAGAAGACTTTGATAGTGAATGA 1893 40.36 MRSSPSFLFVADSKATNLIHLYDKMDNGTSNSSTQSAVTNSAPIVDSQSSKGDNLTSILSSSGISSWAKSFRNPQPPEAAENDSKAGNSGMSAIARFSSGFGLRIPAMSPVQSDGAADTKPAMHSGVFESLTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFLGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFEGKVAHFPFDDHNCPPIHLTKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTRKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKILLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLPTRLKTDSTSKGSYRRSIHDRASGNEAAQSNTNKISGGEENDDDVFSDSDEENGDIKTSLAQSTSGTGNGTSKAGHSSTAIASGRIGSLAHDTSCLTLGNEKNSQPNAPKEPAVIQSSALEIPNLDLVRASDFKAIAADASVFTFGDEEDFDSE 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33598737 33603778 + CePI673135_04g013970.1 Cec04g1397 200879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1397 630 Gene3D Protein tyrosine phosphatase superfamily 144 341 IPR029021 -
Cec04g1397 630 ProSiteProfiles Phosphatase tensin-type domain profile. 159 338 IPR029023 -
Cec04g1397 630 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 237 293 - -
Cec04g1397 630 MobiDBLite consensus disorder prediction 532 554 - -
Cec04g1397 630 MobiDBLite consensus disorder prediction 479 554 - -
Cec04g1397 630 ProSiteProfiles C2 tensin-type domain profile. 345 472 IPR014020 -
Cec04g1397 630 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 146 540 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Cec04g1397 630 MobiDBLite consensus disorder prediction 29 55 - -
Cec04g1397 630 CDD PTP_PTEN 169 334 IPR045101 GO:0016791(InterPro)
Cec04g1397 630 SMART PTEN_C2_2 343 471 IPR014020 -
Cec04g1397 630 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 167 335 IPR029021 -
Cec04g1397 630 MobiDBLite consensus disorder prediction 67 87 - -
Cec04g1397 630 ProSitePatterns Tyrosine specific protein phosphatases active site. 275 285 IPR016130 GO:0016311(InterPro)
Cec04g1397 630 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 273 312 IPR000387 GO:0016311(InterPro)
Cec04g1397 630 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 144 341 - -
Cec04g1397 630 Pfam PTEN2, C2 domain 345 473 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1397 K01110 - - csv:101213277 1095.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1397 Cec-Chr4:33598737 Cec10g1555 Cec-Chr10:30012229 2.00E-39 dispersed
Cec02g0662 Cec-Chr2:6767504 Cec04g1397 Cec-Chr4:33598737 1.40E-200 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1015 . . . Bda10g00247 . . . Bma15g00872 . Cmo07g00697 . . . . Sed14g0873 Cpe19g00640 . Bhi03g00963 Tan03g1590 Cmetu04g1134 . Hepe04g1268 . . Cla01g01668 Cam01g1749 Cec04g1397 Cco04g1461 Clacu01g1774 Cmu01g1654 Cre04g1330 . . Cone8ag0143 Cone12ag0143 Lsi01g00954 Csa06g02964 . Cme08g00594 . . . . . . . . . . . . Cma07g00685 . Car07g00682 . . . . . . . . . . . . . . . . . . Chy02g00892 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec04g1397 . 57 630 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 4.4e-191 664.8
Cec02g0662 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 7.7e-180 627.5
Cec10g1555 . 289 658 Protein tyrosine phosphatase (PTP) family AT5G39400 69.2 1.4e-153 539.7
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.3 1.3e-299 1025.8
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.1 2.8e-286 981.5
Cec06g1416 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1085.9
Cec05g1807 . 1 1362 Protein tyrosine phosphatase (PTP) family AT5G58160 50.8 1.4e-305 1046.2
Cec09g1024 . 87 351 Protein tyrosine phosphatase (PTP) family AT1G71860 65.4 3.5e-102 368.6
Cec06g2025 . 201 1098 Protein tyrosine phosphatase (PTP) family AT5G23720 65.5 0.0e+00 1098.2
Cec06g0587 . 75 214 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 2.0e-42 169.1
Cec09g2184 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cec05g2366 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 1.1e-114 409.8
Cec07g0550 . 10 271 Protein tyrosine phosphatase (PTP) family AT3G10940 65.3 6.2e-97 350.9
Cec10g1431 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 2.5e-201 698.4
Cec02g1896 . 91 292 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Cec09g1099 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cec03g1081 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 1.6e-54 209.9
Cec10g0247 . 83 415 Protein tyrosine phosphatase (PTP) family AT2G35680 55.2 7.2e-100 360.9
Cec11g0207 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.3e-80 297.0
Cec11g0207 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.3e-45 179.9
Cec10g0247 . 119 294 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 5.9e-43 171.0
Cec02g1896 . 125 293 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Cec09g1099 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.0e-70 260.8
Cec03g1081 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Cec03g1081 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 71.6 3.8e-80 294.7
Cec02g1896 . 116 288 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.5e-57 218.0
Cec07g0343 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.3e-63 239.2
Cec10g1555 . 289 658 Protein tyrosine phosphatase (PTP) family AT5G39400 69.2 1.4e-153 539.7
Cec02g0662 . 33 612 Protein tyrosine phosphatase (PTP) family AT3G19420 66.7 1.9e-220 762.3
Cec04g1397 . 55 630 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 1.0e-197 686.8
Cec04g1397 . 57 630 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 4.4e-191 664.8
Cec02g0662 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 7.7e-180 627.5
Cec06g1416 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1085.9
Cec05g1807 . 1 1362 Protein tyrosine phosphatase (PTP) family AT5G58160 50.8 1.4e-305 1046.2
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.3 1.3e-299 1025.8
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.1 2.8e-286 981.5
Cec02g2310 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 6.7e-69 257.7
Cec10g0184 . 22 308 Protein tyrosine phosphatase (PTP) family AT2G35320 63.4 3.2e-107 385.2
Cec04g0863 . 1 721 Protein tyrosine phosphatase (PTP) family AT3G09100 65.7 8.2e-281 963.0
Cec04g0863 . 5 721 Protein tyrosine phosphatase (PTP) family AT5G01290 61.3 1.2e-252 869.4
Cec04g0863 . 86 721 Protein tyrosine phosphatase (PTP) family AT5G28210 52.4 5.8e-180 627.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83