Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1397 ATGAGATCGAGCCCAAGTTTTCTATTCGTCGCTGATAGTAAAGCAACAAACCTGATTCATTTGTATGATAAAATGGATAATGGAACTTCTAATAGTTCAACTCAATCTGCAGTCACCAATTCAGCTCCAATAGTTGATAGCCAAAGTAGTAAAGGAGATAATTTGACATCTATTTTATCTTCGTCTGGAATATCATCTTGGGCTAAGAGTTTCAGAAATCCACAACCACCTGAAGCAGCAGAAAATGACTCCAAAGCAGGAAATTCTGGGATGTCAGCAATTGCTCGTTTTAGTAGTGGTTTTGGACTCCGGATACCTGCGATGTCTCCTGTACAAAGTGATGGTGCTGCAGATACCAAACCAGCAATGCACTCTGGTGTTTTTGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAAGCACGTCATATTGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACCGAAAACATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTGGGATTCCTTGAGGGATTTTACAGAAACCATATGGAGGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCGCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCACAAAATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCGATTGACTATTATAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTATTTTGAGCGGATTTTAACACATTTCAACGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCATTACGATATCAAATCACAGTGAGATTTTGTTCTCAACAAGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTAGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCTGGGGATTTCAAGATTCATTTTCATGACCGGCATGGAGACTTTTACTGTTGGTTAAATACAACAATGACAGAAAACAAAATATTATTAAGTGACACGGATCTTGATGGTTTCGATAAGAGAAAACTTCCAACCCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTTCTTTGCCAACACGATTGAAAACTGATTCAACTAGCAAAGGATCTTATCGTCGCTCCATTCATGATCGAGCATCAGGTAATGAAGCAGCACAATCCAACACAAACAAAATTTCCGGAGGTGAAGAAAATGATGACGACGTATTCTCCGATAGTGATGAAGAAAATGGTGACATAAAAACCAGTCTAGCTCAATCAACTTCTGGAACTGGAAATGGAACTTCAAAAGCTGGTCATTCATCAACAGCAATTGCCTCCGGAAGAATTGGGAGTTTAGCGCATGATACTAGTTGTTTGACCCTCGGAAATGAGAAAAACTCGCAACCTAATGCTCCAAAAGAACCTGCCGTAATACAATCATCAGCCCTTGAGATCCCAAATTTGGATTTAGTAAGGGCAAGTGATTTCAAGGCAATAGCCGCCGATGCGTCAGTCTTCACATTTGGGGATGAAGAAGACTTTGATAGTGAATGA 1893 40.36 MRSSPSFLFVADSKATNLIHLYDKMDNGTSNSSTQSAVTNSAPIVDSQSSKGDNLTSILSSSGISSWAKSFRNPQPPEAAENDSKAGNSGMSAIARFSSGFGLRIPAMSPVQSDGAADTKPAMHSGVFESLTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFLGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFEGKVAHFPFDDHNCPPIHLTKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTRKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKILLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLPTRLKTDSTSKGSYRRSIHDRASGNEAAQSNTNKISGGEENDDDVFSDSDEENGDIKTSLAQSTSGTGNGTSKAGHSSTAIASGRIGSLAHDTSCLTLGNEKNSQPNAPKEPAVIQSSALEIPNLDLVRASDFKAIAADASVFTFGDEEDFDSE 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33598737 33603778 + CePI673135_04g013970.1 Cec04g1397 200879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1397 630 Gene3D Protein tyrosine phosphatase superfamily 144 341 IPR029021 -
Cec04g1397 630 ProSiteProfiles Phosphatase tensin-type domain profile. 159 338 IPR029023 -
Cec04g1397 630 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 237 293 - -
Cec04g1397 630 MobiDBLite consensus disorder prediction 532 554 - -
Cec04g1397 630 MobiDBLite consensus disorder prediction 479 554 - -
Cec04g1397 630 ProSiteProfiles C2 tensin-type domain profile. 345 472 IPR014020 -
Cec04g1397 630 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 146 540 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Cec04g1397 630 MobiDBLite consensus disorder prediction 29 55 - -
Cec04g1397 630 CDD PTP_PTEN 169 334 IPR045101 GO:0016791(InterPro)
Cec04g1397 630 SMART PTEN_C2_2 343 471 IPR014020 -
Cec04g1397 630 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 167 335 IPR029021 -
Cec04g1397 630 MobiDBLite consensus disorder prediction 67 87 - -
Cec04g1397 630 ProSitePatterns Tyrosine specific protein phosphatases active site. 275 285 IPR016130 GO:0016311(InterPro)
Cec04g1397 630 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 273 312 IPR000387 GO:0016311(InterPro)
Cec04g1397 630 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 144 341 - -
Cec04g1397 630 Pfam PTEN2, C2 domain 345 473 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1397 Cec-Chr4:33598737 Cec10g1555 Cec-Chr10:30012229 2.00E-39 dispersed
Cec02g0662 Cec-Chr2:6767504 Cec04g1397 Cec-Chr4:33598737 1.40E-200 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1397 K01110 - csv:101213277 1095.11