Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g1397 | ATGAGATCGAGCCCAAGTTTTCTATTCGTCGCTGATAGTAAAGCAACAAACCTGATTCATTTGTATGATAAAATGGATAATGGAACTTCTAATAGTTCAACTCAATCTGCAGTCACCAATTCAGCTCCAATAGTTGATAGCCAAAGTAGTAAAGGAGATAATTTGACATCTATTTTATCTTCGTCTGGAATATCATCTTGGGCTAAGAGTTTCAGAAATCCACAACCACCTGAAGCAGCAGAAAATGACTCCAAAGCAGGAAATTCTGGGATGTCAGCAATTGCTCGTTTTAGTAGTGGTTTTGGACTCCGGATACCTGCGATGTCTCCTGTACAAAGTGATGGTGCTGCAGATACCAAACCAGCAATGCACTCTGGTGTTTTTGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAAGCACGTCATATTGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACCGAAAACATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTGGGATTCCTTGAGGGATTTTACAGAAACCATATGGAGGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCGCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCACAAAATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCGATTGACTATTATAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTATTTTGAGCGGATTTTAACACATTTCAACGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCATTACGATATCAAATCACAGTGAGATTTTGTTCTCAACAAGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTAGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCTGGGGATTTCAAGATTCATTTTCATGACCGGCATGGAGACTTTTACTGTTGGTTAAATACAACAATGACAGAAAACAAAATATTATTAAGTGACACGGATCTTGATGGTTTCGATAAGAGAAAACTTCCAACCCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTTCTTTGCCAACACGATTGAAAACTGATTCAACTAGCAAAGGATCTTATCGTCGCTCCATTCATGATCGAGCATCAGGTAATGAAGCAGCACAATCCAACACAAACAAAATTTCCGGAGGTGAAGAAAATGATGACGACGTATTCTCCGATAGTGATGAAGAAAATGGTGACATAAAAACCAGTCTAGCTCAATCAACTTCTGGAACTGGAAATGGAACTTCAAAAGCTGGTCATTCATCAACAGCAATTGCCTCCGGAAGAATTGGGAGTTTAGCGCATGATACTAGTTGTTTGACCCTCGGAAATGAGAAAAACTCGCAACCTAATGCTCCAAAAGAACCTGCCGTAATACAATCATCAGCCCTTGAGATCCCAAATTTGGATTTAGTAAGGGCAAGTGATTTCAAGGCAATAGCCGCCGATGCGTCAGTCTTCACATTTGGGGATGAAGAAGACTTTGATAGTGAATGA | 1893 | 40.36 | MRSSPSFLFVADSKATNLIHLYDKMDNGTSNSSTQSAVTNSAPIVDSQSSKGDNLTSILSSSGISSWAKSFRNPQPPEAAENDSKAGNSGMSAIARFSSGFGLRIPAMSPVQSDGAADTKPAMHSGVFESLTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFLGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFEGKVAHFPFDDHNCPPIHLTKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTRKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKILLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLPTRLKTDSTSKGSYRRSIHDRASGNEAAQSNTNKISGGEENDDDVFSDSDEENGDIKTSLAQSTSGTGNGTSKAGHSSTAIASGRIGSLAHDTSCLTLGNEKNSQPNAPKEPAVIQSSALEIPNLDLVRASDFKAIAADASVFTFGDEEDFDSE | 630 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 33598737 | 33603778 | + | CePI673135_04g013970.1 | Cec04g1397 | 200879 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g1397 | 630 | Gene3D | Protein tyrosine phosphatase superfamily | 144 | 341 | IPR029021 | - | |
Cec04g1397 | 630 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 159 | 338 | IPR029023 | - | |
Cec04g1397 | 630 | Pfam | Polymorphic toxin system, DSP-PTPase phosphatase | 237 | 293 | - | - | |
Cec04g1397 | 630 | MobiDBLite | consensus disorder prediction | 532 | 554 | - | - | |
Cec04g1397 | 630 | MobiDBLite | consensus disorder prediction | 479 | 554 | - | - | |
Cec04g1397 | 630 | ProSiteProfiles | C2 tensin-type domain profile. | 345 | 472 | IPR014020 | - | |
Cec04g1397 | 630 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 146 | 540 | IPR051281 | GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER) | |
Cec04g1397 | 630 | MobiDBLite | consensus disorder prediction | 29 | 55 | - | - | |
Cec04g1397 | 630 | CDD | PTP_PTEN | 169 | 334 | IPR045101 | GO:0016791(InterPro) | |
Cec04g1397 | 630 | SMART | PTEN_C2_2 | 343 | 471 | IPR014020 | - | |
Cec04g1397 | 630 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 167 | 335 | IPR029021 | - | |
Cec04g1397 | 630 | MobiDBLite | consensus disorder prediction | 67 | 87 | - | - | |
Cec04g1397 | 630 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 275 | 285 | IPR016130 | GO:0016311(InterPro) | |
Cec04g1397 | 630 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 273 | 312 | IPR000387 | GO:0016311(InterPro) | |
Cec04g1397 | 630 | FunFam | Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 | 144 | 341 | - | - | |
Cec04g1397 | 630 | Pfam | PTEN2, C2 domain | 345 | 473 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g1397 | Cec-Chr4:33598737 | Cec10g1555 | Cec-Chr10:30012229 | 2.00E-39 | dispersed | |
Cec02g0662 | Cec-Chr2:6767504 | Cec04g1397 | Cec-Chr4:33598737 | 1.40E-200 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g1397 | K01110 | - | csv:101213277 | 1095.11 |