Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1406 ATGGATGAACATAGCAAAGATCCTGTCATCAAGGAAAGGAAGAACAAACATTTGGGTGTTTTTGTGGGCTTGGCTGTTGGTGGTTTTGGTTTGATCTGCATTTTAGGCTTTGGGATATTTTTTGGTCTCAAATGGAGTAATCCAAAAACCGAGGAAGCTTCACAAACACACACAAACTGGTCTCCATTGCCTTTATTTGGAGGTCGGAGCACTCACAGCAACTCAACCAGCTCTCCCATCCCCAACCTGAATCTTGGGTTGAAGTTCTCTCTTGCTGAAATCAAAACTGCCACAGACAATTTCAATAAGAAATTCCTTGTTGGTGAGGGTGGTTTTGGGAAAGTTTATAAGGGAGTTATGAGAAATGGCATGAGAGTAGCAGTCAAGAGAAGCCAACCAGGGGCTGGACAAGGTATTTCTGAGTTCGAGAGAGAAATCACGATATTGTCGCGAATTCAACATCGGCACCTCGTTTCGTTTAACGGGTATTGCGATGAGGGACTGGAGATGATTTTGGTTTATGAATTCTTGGAGAAAGGAACTCTTAGGGAGCATCTTTACAACTCAAACTTTCCTCCTCTGTCTTGGAAGAAAAGGCTAGAAATTTGCATTGATGCAGCTAAAGGCTTGCATTACCTACACAAAGGCTTATCCACAGGAATCATTCACCGTGATGTAAAATCAACCAATATTTTACTTGATGAGAACCTTGTCGCTAAAGTTTCCGACTTTGGCCTTTCAACAGCAAGTTCCCTCTACGAAACTCATGTAAGCACAGAAATTAAAGGGACTATCGGGTATCTCGATCCCGAGTATTTTCGAACCCGACAATTGACACAGAAATCTGATGTCTACTCATTTGGGGTACTTCTTCTTGAGATTTTGTGTGCAGGACTAGCTTTGAGTCCAACACTTCCAAATGAGCAAATAAATCTAGCAGAATGGGGGTTGAAGTGCAAGAAAATGGAGTTGCTTGAAGAGATCATTGACCCCAGATTGGAGGGTCAGATTGATTCCAATTCCTTGAGAAAGTTTAGTGATACAATTGAACAATGCTTACAAGAAGGTGGGGAAAATAGGCCTACAATGGCGGATGTGCTATGGGACTTGGAGTATGCATTGCAACTTCAACAAAGTGTTCGCTACAGAATGCCACATGAAGACAGTGAAACCAATGCCTATGGGACCTCTTCAGCAGCCATTCGACGAATTCCTTCAATGGTTTCTTCCATTCTAAGAGATGATACTCAAGATATGAGTCAAGATCTAAACACTCACTTAACTGATAGTCAAGTTTTTTTCTCAGATGAAGGCAGGTGA 1320 41.97 MDEHSKDPVIKERKNKHLGVFVGLAVGGFGLICILGFGIFFGLKWSNPKTEEASQTHTNWSPLPLFGGRSTHSNSTSSPIPNLNLGLKFSLAEIKTATDNFNKKFLVGEGGFGKVYKGVMRNGMRVAVKRSQPGAGQGISEFEREITILSRIQHRHLVSFNGYCDEGLEMILVYEFLEKGTLREHLYNSNFPPLSWKKRLEICIDAAKGLHYLHKGLSTGIIHRDVKSTNILLDENLVAKVSDFGLSTASSLYETHVSTEIKGTIGYLDPEYFRTRQLTQKSDVYSFGVLLLEILCAGLALSPTLPNEQINLAEWGLKCKKMELLEEIIDPRLEGQIDSNSLRKFSDTIEQCLQEGGENRPTMADVLWDLEYALQLQQSVRYRMPHEDSETNAYGTSSAAIRRIPSMVSSILRDDTQDMSQDLNTHLTDSQVFFSDEGR 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33706599 33707918 - CePI673135_04g014060.1 Cec04g1406 200888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1406 439 ProSitePatterns Protein kinases ATP-binding region signature. 107 129 IPR017441 GO:0005524(InterPro)
Cec04g1406 439 FunFam receptor-like protein kinase FERONIA 68 176 - -
Cec04g1406 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1406 439 SMART serkin_6 101 373 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1406 439 Pfam Protein tyrosine and serine/threonine kinase 107 368 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1406 439 ProSiteProfiles Protein kinase domain profile. 101 373 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1406 439 PANTHER OS07G0166700 PROTEIN 88 377 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Cec04g1406 439 Gene3D Phosphorylase Kinase; domain 1 69 176 - -
Cec04g1406 439 SUPERFAMILY Protein kinase-like (PK-like) 75 371 IPR011009 -
Cec04g1406 439 FunFam Receptor-like protein kinase FERONIA 177 392 - -
Cec04g1406 439 Gene3D Transferase(Phosphotransferase) domain 1 177 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1406 Cec-Chr4:33706599 Cec11g1375 Cec-Chr11:28024879 2.10E-200 dispersed
Cec04g1406 Cec-Chr4:33706599 Cec11g1886 Cec-Chr11:33090248 5.30E-111 transposed
Cec04g1406 Cec-Chr4:33706599 Cec05g0996 Cec-Chr5:8741943 5.30E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71926 PF07714 PK_Tyr_Ser-Thr 5.20E-50 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1406 - - - 0.0