Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec04g1448 | ATGATGGTCCACGTTCAAAGTAGCACCCTTCAAGTAGATGATGACAAAACGAGTCTATCTTGCGCATTCACAATCGTTATCGTATTGTTTGAGAAAAAGCAAAGTAGTGGCGATTCCTTGTGTGGATTCCATTTTCAAGTGACAGCTGAGCCTTCCTCACGCACGCTGCCTTTGCTTTCCACATCCTCTTCCTGTCGTATCTCAGCCTTTTTTTTTCAGTTGCCACTGCCATATCAGAGCAGAATTCCAGGTGGATGCACGGTCATTGTTTACGAAACTACCTCCGCCACCTCCTCCGACCGACCCTTTTCGACGCTCTTTTCAATTTCAGTCTTTTCCGAGATGGTCACGTTGCAATCGGCGCGACCGCTGGTTCGCATGTATGAATATCGGCCGTTGATATCCCCATCTTTGGGGAGGTTGAAGCCGGCGAACGTTGCAGTGAACAATGCGATTGGACCGGAGCGGAGTTGTGGAGGTTGGGGGTTCTGTTGCGATGCGGTTACTACTAGTTTCTTGCAGCCATTTAAAGCGGCGACGAGCAATTGCTCTGCGATTCGCGGTAAAGGTTGCCATGACTATGAGACCTCAAGTGGTGGGAAGTCAACAAATATCGTATGGCATGATTGTCCTATTGGGAAGCCTCAAAGAGAAAAGTTGATTCAGCAGAAAGGCTGTGTCATATGGATAACTGGTCTGAGTGGTTCAGGAAAAAGCACTTTGGCATGTGCATTAAGTCAAGGCTTACATTCAAGAAGAAAACTGACCTACATCCTTGATGGTGACAATATTAGGCATGGTCTAAACAGTGATCTTAGTTTTGAACCTGAAGATCGTGCAGAAAACATACGGAGAATTGGTGAGGTAGCAAGCCTCTTTGCAGATGCTGGGATTATTTGTATTGCTAGTTTAATATCTCCTTTTCGGAAGGATAGAGATGCCTGCCGTGCCTTGCTGGCTGAAGGTGAATTTATTGAGGTTTTCCTTGATGTACCACTTGATATATGTGAAGCCCGAGATCCAAAGGGTCTGTATAAACTGTGTAGAGCAGGAAAGATACAAGGATTCACAGGGATAGATGATCCATATGAAGAACCATTAAATTCCGAGATTGTATTGCAATATAAAGAAGGGATGTGCTCGTCCGCTATTGACATGGCGGAAAGAGTGATTTCATATTTAGAAGAGAGAGGATTCGGAAGACGACATGTCGGCAAAAAGTCAGCTTCGGACCTCGTCTGGATTTTGAGTTGGTGTGGAAGGAGGAGGAGCCCTAATTGCAGAGTTCGAAGCTCTAAGGGGCAAAGGAAGATGGGGAAGAAACAGCACAGTAAAGACCGTCTGTTTATTACGAAAACTGAATGGGCCACCGAATGGGGTGGCGCCAAACCAAAGGACTCTCAAACCCCTTTCAAACGCCTTCCTTTCTATTGCTGCGCGCTTACATTTACACCCTTCGAGGACCCTGTTTGTACCGCCGATGGCAGCGTGTTCGAGATTATGAATATCATCCCTTATATTCGAAAGTATGGTAAAAATCCTGTTACTGGAGCTTCCCTGAAGCAGGAGGAACTAATTCCGCTGACATTCCACAAGAATTCTGAAGGCGAGTTCCAATGTCCTGTACTAAACAAAGTTTTTACCGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTCTTCTGCTACGAGGCAGTTAAAGAATTAAATATCAAGACAAAAAATTGGAAGGAACTTCTCACTGATGAACCATTTAGTAGGGGAGATATTTTAACCATTCAGAACCCTAGTGCTCTTGATAGTAAGGTTCTACTGGATTTTGATCATGTGAAAAATAGCCTAAAAGTTGATGATGAAGAACTTCAAAAAATGAAATCAGATCCAACATATAACATAAATGTGTCGGGGGACATCAAGCAGATGCTGCAGGAACTTGGAACTGAAAAGGGAAGGCAAACTGCACTTCATGGGGGAGGTGGTGGCAAGGCACAAAAAGAAAGGGCGGCTGCACTTGCTGCAATTTTAGCTGCTAGGTCACGCATTAAAGAGGATTCCAAGGAGAATGCAAAAGGAGAGGATAAACCTACGCAGGCATTTAGTATTGTGGATGCTGCATCTGCCTCAGTGCATGGAAGAAGTGCAGCTGCTGCGAAAGCTGCACCAAGTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGAGAGGGCACCAGTAAATGCTAAAATGGTAAAGAGTCGTTACACTACTGGTGCTGCATCCCGGTCCTTCACATCTACATCTTACGACCCTGTTACAAAGAATGAACATGAATATATCAAGGTTGAGAAAAACCCAAAGAAGAAAGGATATGTACAGTTGCATACAACACATGGAGATTTGAATATTGAACTACATTGTGATATTACTCCAAGAACATGCGAGAATTTCATCACACTTTGTGGAAATGGCTACTACAATGGAGTTGCTTTTCATAGAAGTATTAGGAATTTTATGATTCAAGGTGGTGATCCAACTGGTACTGGGAGAGGGGGTGAATCTATATGGGGAAAGCCCTTCAAAGATGAACTTAACTCCAAGCTGCTTCATTCTGGAAGGGGTGTTGTCAGTATGGCAAATAGTGGTCCACACACTAATGGTTCCCAGTTCTTTATTCTTTACAAATCTGCCAATCACTTAAACTTCAAGCATACCGTATTTGGCGGTGTTGTTGGTGGGTTGACTGCCTTGGCAGCAATGGAAAAGGTTCCTGTTGATGACAATGATCGGCCTCTGGAGGAGATCAAGATAACAAGTGTCACAGTTTTTGTGAATCCATACTCGGAACCTGATGAAGAGGAAGAAAAGCAAAAAGACGAGAAGAATGTGGAGGATGAAGAAAACGATAAGGTTGGATCATGGTATAGTAACCCAGGCACCGGGGTAGCTGAAGATGGAGCTGCTGGTGGCGGTGTAGGGAAGTATTTGAAAGCAAGAAATGCCCAATCCAAACCCCCAGCTATTGATAGTAGTCTAAAACAAACTACCTCGACCAAGAAAAGAACAGCTGCAGGAGAATTCAAAGACTTCTCTTCTTGGTAA | 3090 | 44.14 | MMVHVQSSTLQVDDDKTSLSCAFTIVIVLFEKKQSSGDSLCGFHFQVTAEPSSRTLPLLSTSSSCRISAFFFQLPLPYQSRIPGGCTVIVYETTSATSSDRPFSTLFSISVFSEMVTLQSARPLVRMYEYRPLISPSLGRLKPANVAVNNAIGPERSCGGWGFCCDAVTTSFLQPFKAATSNCSAIRGKGCHDYETSSGGKSTNIVWHDCPIGKPQREKLIQQKGCVIWITGLSGSGKSTLACALSQGLHSRRKLTYILDGDNIRHGLNSDLSFEPEDRAENIRRIGEVASLFADAGIICIASLISPFRKDRDACRALLAEGEFIEVFLDVPLDICEARDPKGLYKLCRAGKIQGFTGIDDPYEEPLNSEIVLQYKEGMCSSAIDMAERVISYLEERGFGRRHVGKKSASDLVWILSWCGRRRSPNCRVRSSKGQRKMGKKQHSKDRLFITKTEWATEWGGAKPKDSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGASLKQEELIPLTFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAVKELNIKTKNWKELLTDEPFSRGDILTIQNPSALDSKVLLDFDHVKNSLKVDDEELQKMKSDPTYNINVSGDIKQMLQELGTEKGRQTALHGGGGGKAQKERAAALAAILAARSRIKEDSKENAKGEDKPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCGNGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTALAAMEKVPVDDNDRPLEEIKITSVTVFVNPYSEPDEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAEDGAAGGGVGKYLKARNAQSKPPAIDSSLKQTTSTKKRTAAGEFKDFSSW | 1029 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 34078613 | 34089927 | - | CePI673135_04g014480.1 | Cec04g1448 | 200930 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec04g1448 | 1029 | Gene3D | - | 767 | 952 | IPR029000 | - | |
| Cec04g1448 | 1029 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 787 | 938 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cec04g1448 | 1029 | CDD | RING-Ubox_PPIL2 | 475 | 547 | IPR026951 | - | |
| Cec04g1448 | 1029 | SMART | Ubox_2 | 476 | 538 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cec04g1448 | 1029 | SUPERFAMILY | Cyclophilin-like | 787 | 953 | IPR029000 | - | |
| Cec04g1448 | 1029 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 223 | 397 | IPR027417 | - | |
| Cec04g1448 | 1029 | PANTHER | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE | 198 | 399 | - | GO:0000103(PANTHER)|GO:0004020(PANTHER) | |
| Cec04g1448 | 1029 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 801 | 816 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cec04g1448 | 1029 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 870 | 885 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cec04g1448 | 1029 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 885 | 897 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cec04g1448 | 1029 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 898 | 913 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cec04g1448 | 1029 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 827 | 839 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cec04g1448 | 1029 | FunFam | Peptidyl-prolyl cis-trans isomerase cyp65 | 768 | 952 | - | - | |
| Cec04g1448 | 1029 | FunFam | Peptidyl-prolyl cis-trans isomerase 2 | 478 | 533 | - | - | |
| Cec04g1448 | 1029 | CDD | cyclophilin_RING | 787 | 945 | - | - | |
| Cec04g1448 | 1029 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 791 | 938 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cec04g1448 | 1029 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 477 | 533 | IPR013083 | - | |
| Cec04g1448 | 1029 | MobiDBLite | consensus disorder prediction | 945 | 967 | - | - | |
| Cec04g1448 | 1029 | Pfam | Adenylylsulphate kinase | 224 | 373 | - | - | |
| Cec04g1448 | 1029 | CDD | APSK | 227 | 373 | IPR002891 | GO:0000103(InterPro)|GO:0004020(InterPro)|GO:0005524(InterPro) | |
| Cec04g1448 | 1029 | SUPERFAMILY | RING/U-box | 474 | 541 | - | - | |
| Cec04g1448 | 1029 | ProSiteProfiles | U-box domain profile. | 472 | 545 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cec04g1448 | 1029 | Coils | Coil | 945 | 965 | - | - | |
| Cec04g1448 | 1029 | Hamap | Adenylyl-sulfate kinase [cysC]. | 223 | 398 | IPR002891 | GO:0000103(InterPro)|GO:0004020(InterPro)|GO:0005524(InterPro) | |
| Cec04g1448 | 1029 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 822 | 839 | IPR020892 | GO:0003755(InterPro)|GO:0006457(InterPro) | |
| Cec04g1448 | 1029 | Gene3D | - | 195 | 399 | IPR027417 | - | |
| Cec04g1448 | 1029 | MobiDBLite | consensus disorder prediction | 940 | 1029 | - | - | |
| Cec04g1448 | 1029 | NCBIfam | adenylyl-sulfate kinase | 207 | 378 | IPR002891 | GO:0000103(InterPro)|GO:0004020(InterPro)|GO:0005524(InterPro) | |
| Cec04g1448 | 1029 | MobiDBLite | consensus disorder prediction | 1000 | 1017 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec04g1448 | Cec-Chr4:34078613 | Cec10g1030 | Cec-Chr10:23163946 | 5.80E-84 | dispersed | |
| Cec04g1448 | Cec-Chr4:34078613 | Cec02g0613 | Cec-Chr2:6089652 | 2.40E-29 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec04g1448 | K10598 | - | csv:101204462 | 1066.22 |