Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g1474 | ATGAATAATGTTAATGGCAACAACTGTAACTGGCTAGGTTTCTCTGTCTCCCCCAAGGTTAACATGGAGCTTTCTTCTTCCTCTGCTACTACTGTCTCCCCTTCAATTCCTGCAAATCTTTTTCACTCCCCATCTCAGTTTAACTATGGCATTTGCTATGGTGTTGATGCAGAACATGGTGGATTTTATTCACCATTATCTGCCATGCCACTCAAGTCAGATGGCTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCATCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAAAGCAATGACAGGGAAGCTATGGCTCTCAGCCTAGACAGCATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAAACCTTTGCACATTTCTCATCCTTAAGGAGCCGCGAACTGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAGCAACACCATCCAGCAGTAGCCCAGAGTGATATTTCTAGTATGAAGAATTGGGCTGTTCCTAGAAACTATGCTGCCACTAACAATGGTTCGTTCGAGCAGAAGATGGTGAATTGCATGAGTGAAAATAGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACAACCACACAGCATGTCTCACCTGCCATGGCTGACTGTTCTGCCATGGATACAAAGAAAAGAGGCCATGAGAAGGTTGATCCCAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGACAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACACACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTGAGAAGAAGAAGCAGCGGGTTCTCAAGAGGGGCCTCGATATACAGAGGTGTAACAAGGCATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCTGCCGAGGCTTATGATATAGCAGCCATAAAATTTCGAGGAATGAATGCCGTTACTAATTTCGATATCACGAGGTATGACGTGGAGCGGATTATTGCAAGCAATACCCTCCTTAGTGGCGATCTAGCTAAGAGAAAGCAGCAGCCAGAGTTTGATAATGAATCACTTAGACGAAGCCCTACTCACAACTGCAATTCAGAAGCTATGCCTCTGCCCTCACAGAATAGCAGTCAAAGTGAATCAGACTGGAAAATGGCTCTTTATCAGTCATCACAGCAGCTCGTTCCGAAGCAACGAATGTTGTCTGCAATAAACGATGATGGATCACAAATTGGAGTCGAAGATTCGGCCAGAATGGGAGCTCATATCTCCAATGCATCTTCAATGGTGACTAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCGATGGTGTTCGGAATGCCTCAATCGACATCTAAGCCGTTTGCTGCCTCGGCTAGTAATATGAACACCTCCTGGATTGCATCTGCCCAACAGTTAAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACTGATACTTAA | 1890 | 45.66 | MNNVNGNNCNWLGFSVSPKVNMELSSSSATTVSPSIPANLFHSPSQFNYGICYGVDAEHGGFYSPLSAMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQTFAHFSSLRSRELMLQDSKVILPDGCNLQQQQQHHPAVAQSDISSMKNWAVPRNYAATNNGSFEQKMVNCMSENSGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTTTQHVSPAMADCSAMDTKKRGHEKVDPKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRRSPTHNCNSEAMPLPSQNSSQSESDWKMALYQSSQQLVPKQRMLSAINDDGSQIGVEDSARMGAHISNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFAASASNMNTSWIASAQQLRAANCMSQLPVFAAWTDT | 629 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 34282342 | 34285456 | + | CePI673135_04g014740.1 | Cec04g1474 | 200956 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g1474 | 629 | Gene3D | AP2/ERF domain | 395 | 455 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1474 | 629 | Gene3D | AP2/ERF domain | 292 | 361 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1474 | 629 | ProSiteProfiles | AP2/ERF domain profile. | 395 | 453 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1474 | 629 | Pfam | AP2 domain | 293 | 351 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1474 | 629 | Pfam | AP2 domain | 396 | 446 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1474 | 629 | Coils | Coil | 360 | 380 | - | - | |
Cec04g1474 | 629 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 218 | 521 | - | - | |
Cec04g1474 | 629 | FunFam | AP2-like ethylene-responsive transcription factor | 394 | 455 | - | - | |
Cec04g1474 | 629 | PRINTS | Ethylene responsive element binding protein signature | 294 | 305 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1474 | 629 | PRINTS | Ethylene responsive element binding protein signature | 435 | 455 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1474 | 629 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 292 | 361 | - | - | |
Cec04g1474 | 629 | SMART | rav1_2 | 293 | 365 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1474 | 629 | SMART | rav1_2 | 395 | 459 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1474 | 629 | CDD | AP2 | 292 | 359 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1474 | 629 | CDD | AP2 | 394 | 455 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1474 | 629 | MobiDBLite | consensus disorder prediction | 489 | 511 | - | - | |
Cec04g1474 | 629 | SUPERFAMILY | DNA-binding domain | 292 | 361 | IPR016177 | GO:0003677(InterPro) | |
Cec04g1474 | 629 | MobiDBLite | consensus disorder prediction | 474 | 511 | - | - | |
Cec04g1474 | 629 | ProSiteProfiles | AP2/ERF domain profile. | 293 | 359 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g1474 | 629 | SUPERFAMILY | DNA-binding domain | 394 | 454 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g1474 | Cec-Chr4:34282342 | Cec05g2889 | Cec-Chr5:39038248 | 1.10E-128 | dispersed | |
Cec02g2445 | Cec-Chr2:41663069 | Cec04g1474 | Cec-Chr4:34282342 | 3.70E-91 | transposed | |
Cec06g1541 | Cec-Chr6:28928123 | Cec04g1474 | Cec-Chr4:34282342 | 3.00E-91 | transposed | |
Cec10g0760 | Cec-Chr10:11464649 | Cec04g1474 | Cec-Chr4:34282342 | 4.00E-86 | transposed | |
Cec04g1474 | Cec-Chr4:34282342 | Cec08g1733 | Cec-Chr8:28445373 | 2.10E-153 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29368 | PF00847 | AP2 | 1.20E-13 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g1474 | K09285 | - | csv:101203323 | 1152.89 |