Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1474 ATGAATAATGTTAATGGCAACAACTGTAACTGGCTAGGTTTCTCTGTCTCCCCCAAGGTTAACATGGAGCTTTCTTCTTCCTCTGCTACTACTGTCTCCCCTTCAATTCCTGCAAATCTTTTTCACTCCCCATCTCAGTTTAACTATGGCATTTGCTATGGTGTTGATGCAGAACATGGTGGATTTTATTCACCATTATCTGCCATGCCACTCAAGTCAGATGGCTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCATCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAAAGCAATGACAGGGAAGCTATGGCTCTCAGCCTAGACAGCATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAAACCTTTGCACATTTCTCATCCTTAAGGAGCCGCGAACTGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAGCAACACCATCCAGCAGTAGCCCAGAGTGATATTTCTAGTATGAAGAATTGGGCTGTTCCTAGAAACTATGCTGCCACTAACAATGGTTCGTTCGAGCAGAAGATGGTGAATTGCATGAGTGAAAATAGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACAACCACACAGCATGTCTCACCTGCCATGGCTGACTGTTCTGCCATGGATACAAAGAAAAGAGGCCATGAGAAGGTTGATCCCAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGACAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACACACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTGAGAAGAAGAAGCAGCGGGTTCTCAAGAGGGGCCTCGATATACAGAGGTGTAACAAGGCATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCTGCCGAGGCTTATGATATAGCAGCCATAAAATTTCGAGGAATGAATGCCGTTACTAATTTCGATATCACGAGGTATGACGTGGAGCGGATTATTGCAAGCAATACCCTCCTTAGTGGCGATCTAGCTAAGAGAAAGCAGCAGCCAGAGTTTGATAATGAATCACTTAGACGAAGCCCTACTCACAACTGCAATTCAGAAGCTATGCCTCTGCCCTCACAGAATAGCAGTCAAAGTGAATCAGACTGGAAAATGGCTCTTTATCAGTCATCACAGCAGCTCGTTCCGAAGCAACGAATGTTGTCTGCAATAAACGATGATGGATCACAAATTGGAGTCGAAGATTCGGCCAGAATGGGAGCTCATATCTCCAATGCATCTTCAATGGTGACTAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCGATGGTGTTCGGAATGCCTCAATCGACATCTAAGCCGTTTGCTGCCTCGGCTAGTAATATGAACACCTCCTGGATTGCATCTGCCCAACAGTTAAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACTGATACTTAA 1890 45.66 MNNVNGNNCNWLGFSVSPKVNMELSSSSATTVSPSIPANLFHSPSQFNYGICYGVDAEHGGFYSPLSAMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQTFAHFSSLRSRELMLQDSKVILPDGCNLQQQQQHHPAVAQSDISSMKNWAVPRNYAATNNGSFEQKMVNCMSENSGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTTTQHVSPAMADCSAMDTKKRGHEKVDPKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRRSPTHNCNSEAMPLPSQNSSQSESDWKMALYQSSQQLVPKQRMLSAINDDGSQIGVEDSARMGAHISNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFAASASNMNTSWIASAQQLRAANCMSQLPVFAAWTDT 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34282342 34285456 + CePI673135_04g014740.1 Cec04g1474 200956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1474 629 Gene3D AP2/ERF domain 395 455 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1474 629 Gene3D AP2/ERF domain 292 361 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1474 629 ProSiteProfiles AP2/ERF domain profile. 395 453 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1474 629 Pfam AP2 domain 293 351 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1474 629 Pfam AP2 domain 396 446 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1474 629 Coils Coil 360 380 - -
Cec04g1474 629 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 218 521 - -
Cec04g1474 629 FunFam AP2-like ethylene-responsive transcription factor 394 455 - -
Cec04g1474 629 PRINTS Ethylene responsive element binding protein signature 294 305 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1474 629 PRINTS Ethylene responsive element binding protein signature 435 455 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1474 629 FunFam AP2-like ethylene-responsive transcription factor ANT 292 361 - -
Cec04g1474 629 SMART rav1_2 293 365 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1474 629 SMART rav1_2 395 459 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1474 629 CDD AP2 292 359 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1474 629 CDD AP2 394 455 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1474 629 MobiDBLite consensus disorder prediction 489 511 - -
Cec04g1474 629 SUPERFAMILY DNA-binding domain 292 361 IPR016177 GO:0003677(InterPro)
Cec04g1474 629 MobiDBLite consensus disorder prediction 474 511 - -
Cec04g1474 629 ProSiteProfiles AP2/ERF domain profile. 293 359 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1474 629 SUPERFAMILY DNA-binding domain 394 454 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1474 Cec-Chr4:34282342 Cec05g2889 Cec-Chr5:39038248 1.10E-128 dispersed
Cec02g2445 Cec-Chr2:41663069 Cec04g1474 Cec-Chr4:34282342 3.70E-91 transposed
Cec06g1541 Cec-Chr6:28928123 Cec04g1474 Cec-Chr4:34282342 3.00E-91 transposed
Cec10g0760 Cec-Chr10:11464649 Cec04g1474 Cec-Chr4:34282342 4.00E-86 transposed
Cec04g1474 Cec-Chr4:34282342 Cec08g1733 Cec-Chr8:28445373 2.10E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29368 PF00847 AP2 1.20E-13 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1474 K09285 - csv:101203323 1152.89