Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1513 ATGTTTTGTTCTTCAAATCTGTCTGTCTTTAGCATTAGAAATGAGGAGAGAGAATTTGAGAGAGAGAAAATCCCAAAAAGCAGATTCCTCTTTTCCATAGCTCTTAGGCCTTGCCCTAGGACCAAAAGAAGGAAGAAGAAGACAATGGAGCTCAGTCAACATGCACTTTTGATGAGAATCCCCAAATGGCTCTACGGCAATTTTCTCGAAGGGTTTGCAATGCCGGAGCTTGATTCCTCATCGTACACTAAGAACAACGAAACCCCACCATTTATTTCTCAAGAAGAAATGAGTAATAAGAACAGCGGTTACCCTCCGGCGGCGATGGAGGAGGAAGAACTTGGTTTTATAGAGATTGAAACAGCTCCAAGTGTTTGCAAAGTGGAAATGGAGCAAATGGGTTTGCGTGAAACTAATGGTTCTAAAATGGGTGTGGCAGAATTAGGGAAAAGAAGCAGCATCAAGGCTAGAAAGATTGAAGGACAGCCCTCAAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTCAGAGCCATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACAATCGATTATGTGAAAGAGCTGATAGAAAGAATCAATAACTTGAAAGAAGAAGAGGAAATTGGTTTAGATTCAAATCACGTGCGCTTCTTCAATGGGATCTCCAAGGAAGGGAAGTCCAACGAAGTTCAAATGAGGAATTCCCCAAAGTTCGAAGTTGAAAGGACGGAGAGGGAGACTCGAATCGACATTTGCTGTGCAACGAGGCCAGGGTTATTACTGTCTACAGTCAACACATTAGAAGCATTGGGGCTTGAGATTCAACAGTGTGTTATTAGCTGTTTCAATGATTTTTCAATGCAAGCTTCTTGTTCAGAGGGAAGTGCTCAGAAAGCTGTGGCAAGTTCTGATGATATAAAGGAATCACTGTTCAGAAATGCAGGATATGGAGGGAAGTGCTTGTAG 1011 42.04 MFCSSNLSVFSIRNEEREFEREKIPKSRFLFSIALRPCPRTKRRKKKTMELSQHALLMRIPKWLYGNFLEGFAMPELDSSSYTKNNETPPFISQEEMSNKNSGYPPAAMEEEELGFIEIETAPSVCKVEMEQMGLRETNGSKMGVAELGKRSSIKARKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELIERINNLKEEEEIGLDSNHVRFFNGISKEGKSNEVQMRNSPKFEVERTERETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSAQKAVASSDDIKESLFRNAGYGGKCL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34660382 34663273 - CePI673135_04g015130.1 Cec04g1513 200995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1513 336 Gene3D - 154 224 IPR036638 GO:0046983(InterPro)
Cec04g1513 336 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 111 331 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cec04g1513 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983(InterPro)
Cec04g1513 336 Pfam Helix-loop-helix DNA-binding domain 168 210 IPR011598 GO:0046983(InterPro)
Cec04g1513 336 Pfam Plant bHLH transcription factor, ACT-like domain 254 325 IPR054502 -
Cec04g1513 336 SMART finulus 167 216 IPR011598 GO:0046983(InterPro)
Cec04g1513 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 223 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1513 Cec-Chr4:34660382 Cec05g1432 Cec-Chr5:16729218 2.40E-31 dispersed
Cec02g0425 Cec-Chr2:4003926 Cec04g1513 Cec-Chr4:34660382 1.10E-16 transposed
Cec11g1540 Cec-Chr11:29671983 Cec04g1513 Cec-Chr4:34660382 3.20E-68 wgd
Cec04g1513 Cec-Chr4:34660382 Cec08g1223 Cec-Chr8:24160848 1.10E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29375 PF00010 HLH 2.10E-09 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1513 - - - 0.0