Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1519 ATGGGTCGAGGGAAGATTGTGATAAGAAGGATTGACAATTCAGCAAGTAGACAAGTGACTTTCTCCAAGAGAAGAAAGGGACTTATTAAAAAGGCTAAAGAACTCTCTATTCTCTGTGATGCTGAAGTTGGTCTCATTATTTTTTCCAGCTCTGGCAAACACTATGAATTTGCAAGCACTAGCATACAGTCAGTAATTGAGAAATATAACAGAAGGAAGGAGGAAGATGAACTGCTGTTGAATCCAATTTCAGATGTCAAGTTATGGCAGAAGGAAGTAACAACTCTAAGGCAGCAACTACATAACTTGCAGGAGAACAATAGGAAATTAATGGGGGAGCAGCTCTATGGTTTATCAATCAAAGACCTAAACAATCTTGAGAGCCAATTGGAGTTCAGCTTACAAAGCATCCGAATTAAAAAGGAACAAATATTAAATGATGAAATAAAAGAATTGAACCGAAAGGGAATTCTGATGCATCAAGAAAATATAGAGTTGAGCAATAAAGTAAACCTTTATTGTCAAGAAAACATGGAACTACACAGAAAGGTTTACGGGCATGATTCGAGATCAGAGATGAACTTGGCCACCGGAAATGCCTTGATTCCATATGGTATCATCACCGCCGCCGCCGTCCCTATTGCAAGCGACGCCCTGCGTGTACCAATCCATCTTCAGCTCAGCCCGCCGGAGCAACAAGCTTAA 705 40.43 MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASTSIQSVIEKYNRRKEEDELLLNPISDVKLWQKEVTTLRQQLHNLQENNRKLMGEQLYGLSIKDLNNLESQLEFSLQSIRIKKEQILNDEIKELNRKGILMHQENIELSNKVNLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAAAVPIASDALRVPIHLQLSPPEQQA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34709076 34712001 - CePI673135_04g015190.1 Cec04g1519 201001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1519 234 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec04g1519 234 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1519 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 187 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec04g1519 234 Pfam K-box region 85 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec04g1519 234 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1519 234 Coils Coil 123 143 - -
Cec04g1519 234 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec04g1519 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1519 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1519 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1519 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1519 234 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1519 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1519 234 Coils Coil 86 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1519 Cec-Chr4:34709076 Cec04g2114 Cec-Chr4:39048396 8.70E-36 dispersed
Cec03g1848 Cec-Chr3:36808135 Cec04g1519 Cec-Chr4:34709076 7.30E-08 transposed
Cec11g1531 Cec-Chr11:29576698 Cec04g1519 Cec-Chr4:34709076 5.40E-21 wgd
Cec04g1519 Cec-Chr4:34709076 Cec08g1201 Cec-Chr8:23910284 6.00E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29376 PF01486 K-box 1.00E-23 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1519 K09264 - csv:101206453 427.943